WormBase Tree Display for Gene: WBGene00017735

WBGene00017735 SMap: S_parent: Sequence: F23C8
  Identity: Version: 3
    Name: CGC_name: did-2 Person_evidence: WBPerson3188
      Sequence_name: F23C8.6
      Molecular_name: F23C8.6
        F23C8.6.1
        CE20715
      Other_name: phi-24 Person_evidence: WBPerson2582
        CELE_F23C8.6 Accession_evidence: NDB BX284601
      Public_name: did-2
    DB_info: Database: AceView gene 1C988
        WormQTL gene WBGene00017735
        WormFlux gene WBGene00017735
        NDB locus_tag CELE_F23C8.6
        Panther gene CAEEL|WormBase=WBGene00017735|UniProtKB=Q9TXI3
          family PTHR10476
        NCBI gene 171801
        RefSeq protein NM_058573.6
        TREEFAM TREEFAM_ID TF300076
        TrEMBL UniProtAcc Q9TXI3
        UniProt_GCRP UniProtAcc Q9TXI3
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 08 Aug 2013 16:40:57 WBPerson2970 Name_change: CGC_name: did-2
        3 08 Aug 2013 16:41:57 WBPerson2970 Name_change: CGC_name: did-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: did
    Allele (14)
    Strain: WBStrain00003129
      WBStrain00037412
    RNASeq_FPKM (74)
    GO_annotation: 00096979
      00096980
      00096981
      00096982
      00096983
      00096984
      00096985
      00096986
      00096987
      00123037
    Contained_in_operon: CEOP1044
    Ortholog (32)
    Paralog: WBGene00007216 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00012903 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020866 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to be involved in endosome transport via multivesicular body sorting pathway; late endosome to vacuole transport; and protein transport. Located in endosome membrane. Expressed in several structures, including anal depressor muscle; hypodermis; intestine; nervous system; and vulva. Is an ortholog of human CHMP1B (charged multivesicular body protein 1B). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F23C8.6
    Corresponding_transcript: F23C8.6.1
    Other_sequence (73)
    Associated_feature: WBsf648968
      WBsf982870
      WBsf219028
      WBsf219029
  Experimental_info: RNAi_result (25)
    Expr_pattern: Expr3527
      Expr3556
      Expr5836
      Expr15746
      Expr15748
      Expr1015837
      Expr1037613
      Expr1149326
      Expr2010925
      Expr2029164
    Drives_construct: WBCnstr00003612
      WBCnstr00011451
      WBCnstr00027064
      WBCnstr00042506
    Construct_product: WBCnstr00011480
      WBCnstr00021412
      WBCnstr00021414
      WBCnstr00021415
      WBCnstr00027064
      WBCnstr00042506
    Microarray_results (19)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038289:oocyte_protein
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044501:gld-1_let-7_regulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044746:aging_upregulated_HeatShock
      WBPaper00045521:Gender_Neutral
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00047132:glp-1(ts)-25C_upregulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:jmjd-3.1(+)_downregulated
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051265:F4_hrde-1(tm1200)_downregulated
      WBPaper00051265:F4_morc-1(tm6048)_downregulated
      WBPaper00051404:alg-1(gk214)_downregulated
      WBPaper00051558:aging_regulated
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster3
      WBPaper00053814:25C_downregulated_OP50
      WBPaper00055049:S.gordonii_upregulated
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056284:ints-5(RNAi)_upregulated
      WBPaper00056471:S.aureus-4h_downregulated_N2
      WBPaper00057288:Cold_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058958:100mGy-irradiation-72h_upregulated
      WBPaper00059254:CSR-1_interacting
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059895:wounding_upregulated
      WBPaper00059987:Wounding_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00061203:let-418(n3536)_downregulated
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061527:lpd-2-EEED8.16
      WBPaper00061530:nhr-49(e2144)_upregulated
      WBPaper00061651:Rectal_gland_enriched
      WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064055:trl-1(cas1077)_downregulated_starved
      WBPaper00064071:NHR-49_interacting
      WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
      WBPaper00064716:paraquat_upregulated
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:Cisplatin_upregulated_WT
      WBPaper00065373:sek-1(km4)_upregulated_cisplatin
      WBPaper00065945:epidermis-rpoa-2(-)_upregulated_protein
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032165:differentially_expressed_with_age_medoid_7
      WBPaper00036286:Pattern_B
      WBPaper00038231:Cry5B_1.5-fold_upregulated
      WBPaper00038231:Cry5B_2-fold_upregulated
      WBPaper00041606:CE_B.thuringiensis-DB27_regulated
      WBPaper00041606:CE_X.nematophila_regulated
      [cgc5767]:cluster_35
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_ET
      [cgc5767]:expression_class_ET_max(66_min)
      [cgc5767]:expression_class_E_pi(66_min)
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_ME
      [cgc5767]:expression_class_MET
    Interaction (38)
  Map_info: Map: I Position: -8.72793
    Positive: Positive_clone: F23C8 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00031185
    WBPaper00038491
    WBPaper00048833
    WBPaper00055090
    WBPaper00061547
    WBPaper00064339
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene