WormBase Tree Display for Gene: WBGene00017497
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| WBGene00017497 | SMap | S_parent | Sequence | F15E11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | irld-32 | Person_evidence | WBPerson260 | |||||
| Sequence_name | F15E11.11 | ||||||||
| Molecular_name | F15E11.11a | ||||||||
| F15E11.11a.1 | |||||||||
| CE51082 | |||||||||
| F15E11.11b | |||||||||
| CE51126 | |||||||||
| F15E11.11c | |||||||||
| CE51147 | |||||||||
| F15E11.11b.1 | |||||||||
| F15E11.11c.1 | |||||||||
| Other_name | F15E11.k | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| F15E11.e | Curator_confirmed | WBPerson1983 | |||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_F15E11.11 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | irld-32 | ||||||||
| DB_info | Database | AceView | gene | 5C811 | |||||
| WormQTL | gene | WBGene00017497 | |||||||
| WormFlux | gene | WBGene00017497 | |||||||
| NDB | locus_tag | CELE_F15E11.11 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017497|UniProtKB=A0A0M7RDT1 | |||||||
| family | PTHR21662 | ||||||||
| NCBI | gene | 184543 | |||||||
| RefSeq | protein | NM_001316795.1 | |||||||
| NM_001316793.1 | |||||||||
| NM_001316794.1 | |||||||||
| TrEMBL | UniProtAcc | A0A0M7RF64 | |||||||
| A0A0M7REB7 | |||||||||
| A0A0M7RDT1 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A0M7RDT1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 May 2012 15:57:08 | WBPerson2970 | Name_change | CGC_name | irld-32 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | irld | ||||||||
| Allele (32) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (61) | |||||||||
| Paralog (75) | |||||||||
| Structured_description | Automated_description | Is affected by several genes including let-60; sir-2.1; and clk-1 based on tiling array; RNA-seq; and microarray studies. Is affected by Tunicamycin; resveratrol; and Sirolimus based on microarray studies. Is predicted to encode a protein with the following domains: Receptor L domain; Receptor L-domain; and Receptor L-domain superfamily. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F15E11.11a | |||||||
| F15E11.11b | |||||||||
| F15E11.11c | |||||||||
| Corresponding_CDS_history | F15E11.11:wp250 | ||||||||
| Corresponding_transcript | F15E11.11a.1 | ||||||||
| F15E11.11b.1 | |||||||||
| F15E11.11c.1 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044727 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00044726 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044735 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00044728 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013373 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1026603 | ||||||||
| Expr1148697 | |||||||||
| Microarray_results (14) | |||||||||
| Expression_cluster | WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray | ||||||||
| WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray | |||||||||
| WBPaper00040560:hpl-2_embryo_downregulated | |||||||||
| WBPaper00044246:pgrn-1_ced-3_downregulated | |||||||||
| WBPaper00045390:tunicamycin_upregulated | |||||||||
| WBPaper00045420:fertilization_downregulated_transcript | |||||||||
| WBPaper00045774:clk-1_downregulated | |||||||||
| WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult | |||||||||
| WBPaper00050488:adult_vs_dauer_regulated_N2_20C | |||||||||
| WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C | |||||||||
| WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C | |||||||||
| WBPaper00053295:lin-22(icb38)_downregulated | |||||||||
| WBPaper00053909:N2_vs_CB4856_upregulated | |||||||||
| WBPaper00055226:adr-1(tm668)_downregulated | |||||||||
| WBPaper00057068:ints-4(RNAi)_upregulated | |||||||||
| WBPaper00060526:plp-1(ok2155)_upregulated | |||||||||
| WBPaper00060764:swsn-9(ok1354)_downregulated | |||||||||
| WBPaper00061527:176662_at-Y53F4B.16 | |||||||||
| WBPaper00062325:muscle_depleted_coding-RNA | |||||||||
| WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated | |||||||||
| WBPaper00064509:static-magnetic-field_upregulated | |||||||||
| WBPaper00064769:him-17(me24)_upregulated | |||||||||
| WBPaper00065005:sams-3(RNAi)_upregulated | |||||||||
| WBPaper00065005:sams-4(RNAi)_upregulated | |||||||||
| WBPaper00065005:sams-5(RNAi)_downregulated | |||||||||
| WBPaper00066232:ash-2(RNAi)_downregulated_WT | |||||||||
| cgc4489_group_2 | |||||||||
| cgc4489_group_8 | |||||||||
| WBPaper00026929:Resveratrol_regulated_daf-16 | |||||||||
| WBPaper00026929:sir-2.1_overexpression_regulated | |||||||||
| WBPaper00041939:control_vs_UVC-exposed_48h | |||||||||
| WBPaper00042128:gei-8(ok1671)_upregulated | |||||||||
| WBPaper00048989:N2_rapamycin_downregulated | |||||||||
| [cgc5376]:let-60(G12V)-regulated_genes | |||||||||
| Interaction | WBInteraction000170901 | ||||||||
| WBInteraction000194137 | |||||||||
| WBInteraction000211683 | |||||||||
| WBInteraction000215317 | |||||||||
| WBInteraction000331640 | |||||||||
| WBInteraction000344734 | |||||||||
| WBInteraction000400610 | |||||||||
| WBInteraction000401253 | |||||||||
| Map_info | Map | V | Position | -14.8667 | |||||
| Positive | Positive_clone | F15E11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-14.8696) | |||||||||
| [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-14.8654) | |||||||||
| Method | Gene |
