WormBase Tree Display for Gene: WBGene00017440
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| WBGene00017440 | SMap | S_parent | Sequence | F13H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | upb-1 | Paper_evidence | WBPaper00037116 | |||||
| Sequence_name | F13H8.7 | ||||||||
| Molecular_name | F13H8.7 | ||||||||
| F13H8.7.1 | |||||||||
| CE02641 | |||||||||
| Other_name | CELE_F13H8.7 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | upb-1 | ||||||||
| DB_info | Database | AceView | gene | 2G578 | |||||
| WormQTL | gene | WBGene00017440 | |||||||
| WormFlux | gene | WBGene00017440 | |||||||
| NDB | locus_tag | CELE_F13H8.7 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017440|UniProtKB=Q19437 | |||||||
| family | PTHR43674 | ||||||||
| NCBI | gene | 174040 | |||||||
| RefSeq | protein | NM_062860.5 | |||||||
| TREEFAM | TREEFAM_ID | TF313402 | |||||||
| TrEMBL | UniProtAcc | Q19437 | |||||||
| UniProt_GCRP | UniProtAcc | Q19437 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 14 Sep 2010 16:06:52 | WBPerson2970 | Name_change | CGC_name | upb-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | upb | ||||||||
| Allele (23) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00003594 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00014206 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | upb-1 encodes the C. elegans ortholog of 3-ureidopropionase; UPB-1 exhibits enzymatic activity in vitro, catalyzing the catabolism of 3-ureidopropionate and 2-methyl-3-ureidopropionate; a UPB-1::GFP fusion is expressed throughout larval development and in adults; UPB-1::GFP localizes to the dense body of striated body wall muscles, suggesting that UPB-1 may play a role in synthesis of carnosin-like dipeptides. | Paper_evidence | WBPaper00037116 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 19 Jan 2011 00:00:00 | ||||||||
| Automated_description | Enables beta-ureidopropionase activity. Involved in beta-alanine biosynthetic process via 3-ureidopropionate; thymine catabolic process; and uracil catabolic process. Located in striated muscle dense body. Expressed in body wall musculature. Is an ortholog of human UPB1 (beta-ureidopropionase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F13H8.7 | |||||||
| Corresponding_transcript | F13H8.7.1 | ||||||||
| Other_sequence (107) | |||||||||
| Associated_feature | WBsf650126 | ||||||||
| WBsf223145 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00044563 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00110189 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110190 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00013253 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033373 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9128 | ||||||||
| Expr13615 | |||||||||
| Expr1020371 | |||||||||
| Expr1037503 | |||||||||
| Expr1148520 | |||||||||
| Expr2017927 | |||||||||
| Expr2036063 | |||||||||
| Drives_construct | WBCnstr00013735 | ||||||||
| WBCnstr00027298 | |||||||||
| WBCnstr00039724 | |||||||||
| Construct_product | WBCnstr00013735 | ||||||||
| WBCnstr00027298 | |||||||||
| WBCnstr00039724 | |||||||||
| Microarray_results | SMD_F13H8.7 | ||||||||
| 191583_s_at | |||||||||
| A_12_P116853 | |||||||||
| A_12_P135805 | |||||||||
| A_12_P135806 | |||||||||
| Aff_F13H8.7 | |||||||||
| GPL13394_WBGene00017440 | |||||||||
| GPL13914_F13H8.7 | |||||||||
| GPL14144_F13H8.7_550-609_0.913_22_C | |||||||||
| GPL14144_F13H8.7_820-879_0.943_6_B | |||||||||
| GPL14144_F13H8.7_915-974_0.955_3_A | |||||||||
| GPL19516_CGZ0016178 | |||||||||
| GPL21109_F13H8.7 | |||||||||
| GPL3518_CE02641 | |||||||||
| GPL8304_CE_WBGene00017440_A | |||||||||
| GPL8304_CE_WBGene00017440_C | |||||||||
| GPL8673_F13H8_7P00532 | |||||||||
| GPL8673_F13H8_7P00782 | |||||||||
| GPL8673_F13H8_7P01054 | |||||||||
| GPL9450_F13H8.7 | |||||||||
| cea2.c.11289 | |||||||||
| Expression_cluster (189) | |||||||||
| Interaction (35) | |||||||||
| Map_info | Map | II | Position | -0.389204 | Error | 0.000694 | |||
| Positive | Positive_clone | F13H8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00037116 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041771 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00065140 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
