WormBase Tree Display for Gene: WBGene00017422
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| WBGene00017422 | SMap | S_parent | Sequence | F13C5 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | F13C5.1 | |||||||
| Molecular_name | F13C5.1 | ||||||||
| F13C5.1.1 | |||||||||
| CE46510 | |||||||||
| F13C5.1.2 | |||||||||
| Other_name | CELE_F13C5.1 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | F13C5.1 | ||||||||
| DB_info | Database | AceView | gene | XB223 | |||||
| WormQTL | gene | WBGene00017422 | |||||||
| WormFlux | gene | WBGene00017422 | |||||||
| NDB | locus_tag | CELE_F13C5.1 | |||||||
| NCBI | gene | 180411 | |||||||
| RefSeq | protein | NM_001392717.1 | |||||||
| TrEMBL | UniProtAcc | O76564 | |||||||
| UniProt_GCRP | UniProtAcc | O76564 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele | WBVar00492692 | ||||||||
| WBVar00492693 | |||||||||
| WBVar02005226 | |||||||||
| WBVar00492694 | |||||||||
| WBVar00492695 | |||||||||
| WBVar01618299 | |||||||||
| WBVar01498638 | |||||||||
| WBVar02080365 | |||||||||
| WBVar01486162 | |||||||||
| WBVar01486163 | |||||||||
| WBVar01486164 | |||||||||
| WBVar01486165 | |||||||||
| WBVar01486166 | |||||||||
| WBVar01486167 | |||||||||
| WBVar01486168 | |||||||||
| WBVar01486169 | |||||||||
| WBVar01486170 | |||||||||
| WBVar01639586 | |||||||||
| WBVar01486171 | |||||||||
| WBVar02124920 | |||||||||
| WBVar02124921 | |||||||||
| WBVar02138582 | |||||||||
| WBVar01499636 | |||||||||
| WBVar01926723 | |||||||||
| WBVar01113949 | |||||||||
| WBVar01113950 | |||||||||
| WBVar01113951 | |||||||||
| WBVar01113952 | |||||||||
| WBVar01600330 | |||||||||
| WBVar01113953 | |||||||||
| WBVar01113954 | |||||||||
| WBVar02122051 | |||||||||
| WBVar01113955 | |||||||||
| WBVar01113956 | |||||||||
| WBVar01113957 | |||||||||
| WBVar01113958 | |||||||||
| WBVar01113959 | |||||||||
| WBVar01113960 | |||||||||
| WBVar01113961 | |||||||||
| WBVar01113962 | |||||||||
| WBVar01113963 | |||||||||
| WBVar00492687 | |||||||||
| WBVar00492688 | |||||||||
| WBVar00492689 | |||||||||
| WBVar00492690 | |||||||||
| WBVar00492691 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (20) | |||||||||
| Structured_description | Concise_description | F13C5.1 encodes a novel protein with two predicted transmembrane domains; the protein product of F13C5.1 is most closely related to proteins from other nematode species and does not appear to have close homologs in more distantly related organisms. | Curator_confirmed | WBPerson1843 | |||||
| Date_last_updated | 31 Oct 2008 00:00:00 | ||||||||
| Automated_description | Enriched in head mesodermal cell; neurons; and retrovesicular ganglion based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and eat-2 based on RNA-seq and microarray studies. Is affected by fifteen chemicals including methylmercuric chloride; 4-bromodiphenyl ether; and stavudine based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F13C5.1 | |||||||
| Corresponding_CDS_history | F13C5.1:wp226 | ||||||||
| Corresponding_transcript | F13C5.1.1 | ||||||||
| F13C5.1.2 | |||||||||
| Other_sequence | CJC10730_1 | ||||||||
| EX914778.1 | |||||||||
| HBC15058_1 | |||||||||
| CJC10728_1 | |||||||||
| CRC03578_1 | |||||||||
| Oden_isotig27903 | |||||||||
| CR01283 | |||||||||
| Tcol_isotig17126 | |||||||||
| Associated_feature | WBsf647790 | ||||||||
| WBsf662420 | |||||||||
| WBsf662421 | |||||||||
| WBsf716843 | |||||||||
| WBsf1003816 | |||||||||
| WBsf1003817 | |||||||||
| WBsf1003818 | |||||||||
| WBsf1022149 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00082435 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00013202 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00102786 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00052134 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00082699 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000673 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017807 | ||||||||
| Expr1037492 | |||||||||
| Expr1148439 | |||||||||
| Expr2002501 | |||||||||
| Expr2020719 | |||||||||
| Microarray_results | SMD_F13C5.1 | ||||||||
| 172945_s_at | |||||||||
| 182285_at | |||||||||
| A_12_P113268 | |||||||||
| Aff_F13C5.1 | |||||||||
| GPL13394_WBGene00017422 | |||||||||
| GPL13914_F13C5.1 | |||||||||
| GPL14144_F13C5.1_479-538_0.880_25_C | |||||||||
| GPL14144_F13C5.1_649-708_0.913_8_A | |||||||||
| GPL14144_F13C5.1_710-769_0.901_12_B | |||||||||
| GPL19516_CGZ0015847 | |||||||||
| GPL19516_CGZ0015848 | |||||||||
| GPL21109_F13C5.1.1 | |||||||||
| GPL3518_CE19383 | |||||||||
| GPL8304_CE_WBGene00017422_A | |||||||||
| GPL8304_CE_WBGene00017422_B | |||||||||
| GPL8304_CE_WBGene00017422_C | |||||||||
| GPL8673_F13C5_1P00567 | |||||||||
| GPL8673_F13C5_1P00983 | |||||||||
| GPL9450_F13C5.1 | |||||||||
| cea2.p.140256 | |||||||||
| Expression_cluster (187) | |||||||||
| Interaction | WBInteraction000211268 | ||||||||
| WBInteraction000301643 | |||||||||
| WBInteraction000427810 | |||||||||
| WBInteraction000431279 | |||||||||
| Map_info | Positive | Positive_clone | F13C5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | X | -19.5753 | |||||||
| Method | Gene |
