WormBase Tree Display for Gene: WBGene00017422
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WBGene00017422 | SMap | S_parent | Sequence | F13C5 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 1 | |||||||
Name | Sequence_name | F13C5.1 | |||||||
Molecular_name | F13C5.1 | ||||||||
F13C5.1.1 | |||||||||
CE46510 | |||||||||
F13C5.1.2 | |||||||||
Other_name | CELE_F13C5.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | F13C5.1 | ||||||||
DB_info | Database | AceView | gene | XB223 | |||||
WormQTL | gene | WBGene00017422 | |||||||
WormFlux | gene | WBGene00017422 | |||||||
NDB | locus_tag | CELE_F13C5.1 | |||||||
NCBI | gene | 180411 | |||||||
RefSeq | protein | NM_001392717.1 | |||||||
TrEMBL | UniProtAcc | O76564 | |||||||
UniProt_GCRP | UniProtAcc | O76564 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Allele (46) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (20) | |||||||||
Structured_description | Concise_description | F13C5.1 encodes a novel protein with two predicted transmembrane domains; the protein product of F13C5.1 is most closely related to proteins from other nematode species and does not appear to have close homologs in more distantly related organisms. | Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 31 Oct 2008 00:00:00 | ||||||||
Automated_description | Enriched in head mesodermal cell; neurons; and retrovesicular ganglion based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and eat-2 based on RNA-seq and microarray studies. Is affected by fifteen chemicals including methylmercuric chloride; 4-bromodiphenyl ether; and stavudine based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | F13C5.1 | |||||||
Corresponding_CDS_history | F13C5.1:wp226 | ||||||||
Corresponding_transcript | F13C5.1.1 | ||||||||
F13C5.1.2 | |||||||||
Other_sequence | CJC10730_1 | ||||||||
EX914778.1 | |||||||||
HBC15058_1 | |||||||||
CJC10728_1 | |||||||||
CRC03578_1 | |||||||||
Oden_isotig27903 | |||||||||
CR01283 | |||||||||
Tcol_isotig17126 | |||||||||
Associated_feature | WBsf647790 | ||||||||
WBsf662420 | |||||||||
WBsf662421 | |||||||||
WBsf716843 | |||||||||
WBsf1003816 | |||||||||
WBsf1003817 | |||||||||
WBsf1003818 | |||||||||
WBsf1022149 | |||||||||
Experimental_info | RNAi_result | WBRNAi00082435 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00013202 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00102786 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00052134 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00082699 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00000673 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1017807 | ||||||||
Expr1037492 | |||||||||
Expr1148439 | |||||||||
Expr2002501 | |||||||||
Expr2020719 | |||||||||
Microarray_results | SMD_F13C5.1 | ||||||||
172945_s_at | |||||||||
182285_at | |||||||||
A_12_P113268 | |||||||||
Aff_F13C5.1 | |||||||||
GPL13394_WBGene00017422 | |||||||||
GPL13914_F13C5.1 | |||||||||
GPL14144_F13C5.1_479-538_0.880_25_C | |||||||||
GPL14144_F13C5.1_649-708_0.913_8_A | |||||||||
GPL14144_F13C5.1_710-769_0.901_12_B | |||||||||
GPL19516_CGZ0015847 | |||||||||
GPL19516_CGZ0015848 | |||||||||
GPL21109_F13C5.1.1 | |||||||||
GPL3518_CE19383 | |||||||||
GPL8304_CE_WBGene00017422_A | |||||||||
GPL8304_CE_WBGene00017422_B | |||||||||
GPL8304_CE_WBGene00017422_C | |||||||||
GPL8673_F13C5_1P00567 | |||||||||
GPL8673_F13C5_1P00983 | |||||||||
GPL9450_F13C5.1 | |||||||||
cea2.p.140256 | |||||||||
Expression_cluster (187) | |||||||||
Interaction | WBInteraction000211268 | ||||||||
WBInteraction000301643 | |||||||||
WBInteraction000427810 | |||||||||
WBInteraction000431279 | |||||||||
Map_info | Positive | Positive_clone | F13C5 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | X | -19.5753 | |||||||
Method | Gene |