WormBase Tree Display for Gene: WBGene00017132
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| WBGene00017132 | SMap | S_parent | Sequence | F07F6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 7 | |||||||
| Name | CGC_name | tofu-6 | |||||||
| Sequence_name | EEED8.1 | ||||||||
| Molecular_name | EEED8.1 | ||||||||
| EEED8.1.1 | |||||||||
| CE26746 | |||||||||
| Other_name | mel-2 | Person_evidence | WBPerson314 | ||||||
| mel-47 | Person_evidence | WBPerson629 | |||||||
| WBPerson314 | |||||||||
| CELE_EEED8.1 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | tofu-6 | ||||||||
| DB_info | Database | AceView | gene | 2F713 | |||||
| WormQTL | gene | WBGene00017132 | |||||||
| NDB | locus_tag | CELE_EEED8.1 | |||||||
| NCBI | gene | 24104386 | |||||||
| RefSeq | protein | NM_001306578.5 | |||||||
| SwissProt | UniProtAcc | Q09293 | |||||||
| UniProt_GCRP | UniProtAcc | Q09293 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 01 Apr 2005 11:05:24 | WBPerson2970 | Name_change | CGC_name | tudr-1 | ||||
| 3 | 16 Oct 2006 16:56:31 | WBPerson2970 | Name_change | CGC_name | mel-47 | ||||
| Other_name | tudr-1 | ||||||||
| 4 | 28 Mar 2014 15:50:22 | WBPerson2970 | Name_change | CGC_name | tofu-6 | ||||
| Other_name | mel-47 | ||||||||
| 5 | 02 Sep 2014 12:40:48 | WBPerson2970 | Name_change | CGC_name | mel-47 | ||||
| Other_name | tofu-6 | ||||||||
| 6 | 25 Mar 2015 15:33:40 | WBPerson2970 | Event | Acquires_merge | WBGene00003188 | ||||
| Name_change | CGC_name | tofu-6 | |||||||
| Other_name | mel-2 | ||||||||
| 7 | 25 Mar 2015 15:34:24 | WBPerson2970 | Name_change | Other_name | mel-47 | ||||
| Acquires_merge | WBGene00003188 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tofu | ||||||||
| Reference_allele | WBVar00275444 | ||||||||
| WBVar00088001 | |||||||||
| Allele (31) | |||||||||
| Legacy_information | [C.elegansII] it20 : strict maternal effect embryonic lethal. OA1: it22. [Kemphues et al. 1988] | ||||||||
| Strain | WBStrain00023566 | ||||||||
| WBStrain00031149 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (33) | |||||||||
| Ortholog (23) | |||||||||
| Structured_description | Automated_description | Predicted to enable RNA binding activity. Involved in several processes, including embryonic cleavage; mitotic sister chromatid separation; and nucleic acid metabolic process. Located in nucleus and perinuclear region of cytoplasm. Expressed in germ line. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | EEED8.1 | |||||||
| Corresponding_transcript | EEED8.1.1 | ||||||||
| Other_sequence | CRC09352_1 | ||||||||
| CJC06104_1 | |||||||||
| CR00454 | |||||||||
| CBC05784_1 | |||||||||
| Associated_feature | WBsf644193 | ||||||||
| WBsf644194 | |||||||||
| WBsf221278 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00113939 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043689 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00022694 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00103067 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00033559 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00008592 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113938 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr8287 | ||||||||
| Expr14432 | |||||||||
| Expr16061 | |||||||||
| Expr1026068 | |||||||||
| Expr1037359 | |||||||||
| Expr1147673 | |||||||||
| Expr2017448 | |||||||||
| Expr2035587 | |||||||||
| Drives_construct | WBCnstr00016926 | ||||||||
| WBCnstr00037834 | |||||||||
| WBCnstr00040803 | |||||||||
| WBCnstr00042743 | |||||||||
| Construct_product | WBCnstr00016926 | ||||||||
| WBCnstr00037834 | |||||||||
| WBCnstr00040803 | |||||||||
| WBCnstr00042743 | |||||||||
| Regulate_expr_cluster | WBPaper00056900:TOFU-6_interacting | ||||||||
| Microarray_results | SMD_EEED8.1 | ||||||||
| SMD_EEED8.1:2 | |||||||||
| 187189_at | |||||||||
| A_12_P104964 | |||||||||
| Aff_EEED8.1 | |||||||||
| GPL13394_WBGene00017132 | |||||||||
| GPL13914_EEED8.1 | |||||||||
| GPL14144_EEED8.1_1048-1107_0.954_1_C | |||||||||
| GPL14144_EEED8.1_180-239_0.879_24_A | |||||||||
| GPL14144_EEED8.1_22-81_0.858_31_B | |||||||||
| GPL19516_CGZ0014225 | |||||||||
| GPL19516_CGZ0014226 | |||||||||
| GPL21109_EEED8.1.1 | |||||||||
| GPL3518_CE26746 | |||||||||
| GPL8304_CE_WBGene00017132_A | |||||||||
| GPL8673_EEED8_1P00001 | |||||||||
| GPL8673_EEED8_1P00583 | |||||||||
| GPL8673_EEED8_1P00930 | |||||||||
| GPL9450_EEED8.1 | |||||||||
| cea2.c.10836 | |||||||||
| Expression_cluster (173) | |||||||||
| Interaction (472) | |||||||||
| Map_info | Map | II | Position | -1.63708 | Error | 0.021258 | |||
| Positive | Positive_clone | EEED8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5279 | |||||||
| 4538 | |||||||||
| Pos_neg_data | 4469 | ||||||||
| Pseudo_map_position | |||||||||
| Reference (11) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
