WormBase Tree Display for Gene: WBGene00017121
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| WBGene00017121 | SMap | S_parent | Sequence | E04A4 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cyc-2.1 | Person_evidence | WBPerson338 | |||||
| Sequence_name | E04A4.7 | ||||||||
| Molecular_name | E04A4.7 | ||||||||
| E04A4.7.1 | |||||||||
| CE16968 | |||||||||
| E04A4.7.2 | |||||||||
| Other_name | CELE_E04A4.7 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | cyc-2.1 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 09 Mar 2007 14:55:52 | WBPerson2970 | Name_change | CGC_name | cyc-2.1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cyc | ||||||||
| Allele (24) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (13) | |||||||||
| Contained_in_operon | CEOP4148 | ||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00013854 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | cyc-2.1 encodes, along with cyc-2.2, one of two C. elegans cytochrome c proteins; the product of cyc-2.1 is predicted to function in the electron transport chain by transferring electrons from respiratory chain Complex III to Complex IV; large-scale RNAi screens indicate the cyc-2.1 activity is required for embryonic and larval development as well as for normal brood sizes and growth rates. | Paper_evidence | WBPaper00001363 | |||||
| WBPaper00005654 | |||||||||
| WBPaper00006395 | |||||||||
| WBPaper00024497 | |||||||||
| WBPaper00025054 | |||||||||
| WBPaper00041884 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 25 Mar 2013 00:00:00 | ||||||||
| Automated_description | Enables electron transfer activity. Involved in electron transport chain. Predicted to be located in mitochondrial intermembrane space. Expressed in body wall musculature; excretory cell; intestinal cell; nervous system; and pharynx. Human ortholog(s) of this gene implicated in several diseases, including Huntington's disease; carcinoma (multiple); and thrombocytopenia. Is an ortholog of human CYCS (cytochrome c, somatic). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:4947 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19986) | ||||
| DOID:1588 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19986) | ||||||
| DOID:3908 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19986) | ||||||
| DOID:12858 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19986) | ||||||
| DOID:1793 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19986) | ||||||
| DOID:3907 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:19986) | ||||||
| Molecular_info | Corresponding_CDS | E04A4.7 | |||||||
| Corresponding_transcript | E04A4.7.1 | ||||||||
| E04A4.7.2 | |||||||||
| Other_sequence (219) | |||||||||
| Associated_feature | WBsf651775 | ||||||||
| WBsf667905 | |||||||||
| WBsf667906 | |||||||||
| WBsf981752 | |||||||||
| WBsf996386 | |||||||||
| WBsf230008 | |||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr11086 | ||||||||
| Expr1017653 | |||||||||
| Expr1037354 | |||||||||
| Expr1147651 | |||||||||
| Expr2010651 | |||||||||
| Expr2028891 | |||||||||
| Drives_construct | WBCnstr00018157 | ||||||||
| WBCnstr00027556 | |||||||||
| Construct_product | WBCnstr00027556 | ||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (131) | |||||||||
| Interaction (188) | |||||||||
| Map_info | Map | IV | Position | 0.778341 | Error | 0.012862 | |||
| Positive | Positive_clone | E04A4 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00001363 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041884 | |||||||||
| WBPaper00049828 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057083 | |||||||||
| WBPaper00063976 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
