WormBase Tree Display for Gene: WBGene00017045
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| WBGene00017045 | SMap | S_parent | Sequence | D2007 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | atg-13 | Person_evidence | WBPerson649 | |||||
| Sequence_name | D2007.5 | ||||||||
| Molecular_name | D2007.5 | ||||||||
| D2007.5.1 | |||||||||
| CE00130 | |||||||||
| Other_name | epg-1 | Paper_evidence | WBPaper00033109 | ||||||
| CELE_D2007.5 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | atg-13 | ||||||||
| DB_info | Database | AceView | gene | 3J246 | |||||
| WormQTL | gene | WBGene00017045 | |||||||
| WormFlux | gene | WBGene00017045 | |||||||
| NDB | locus_tag | CELE_D2007.5 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00017045|UniProtKB=P34379 | |||||||
| family | PTHR13430 | ||||||||
| NCBI | gene | 176150 | |||||||
| RefSeq | protein | NM_066381.6 | |||||||
| SwissProt | UniProtAcc | P34379 | |||||||
| TREEFAM | TREEFAM_ID | TF321599 | |||||||
| UniProt_GCRP | UniProtAcc | P34379 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 29 Feb 2008 11:29:01 | WBPerson2970 | Name_change | CGC_name | atg-13 | ||||
| 3 | 28 May 2010 15:11:51 | WBPerson2970 | Name_change | Other_name | epg-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | atg | ||||||||
| Allele (32) | |||||||||
| Strain | WBStrain00008601 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP3484 | ||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | atg-13 encodes a divergent ortholog of the autophagic budding yeast protein Atg13p, and a more obvious ortholog of uncharacterized but well-conserved metazoan proteins such as human KIAA0652; ATG-13 is expressed broadly in early (pre-100-cell stage) embryos, in larval and adult ventral nerve cord and other neurons, and in adult pharyngeal muscle. | Paper_evidence | WBPaper00031598 | |||||
| WBPaper00031599 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 16 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to be involved in mitophagy; piecemeal microautophagy of the nucleus; and protein localization to phagophore assembly site. Predicted to be located in cytosol and phagophore assembly site. Predicted to be part of Atg1/ULK1 kinase complex. Expressed in body wall musculature; nerve ring; neurons; and pharyngeal muscle cell. Is an ortholog of human ATG13 (autophagy related 13). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | D2007.5 | |||||||
| Corresponding_transcript | D2007.5.1 | ||||||||
| Other_sequence | CRC09367_1 | ||||||||
| CBC09408_1 | |||||||||
| CRC03976_1 | |||||||||
| JI170287.1 | |||||||||
| CR05465 | |||||||||
| Associated_feature | WBsf651248 | ||||||||
| WBsf227086 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00076257 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00092346 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012559 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043436 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005425 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00030376 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092345 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00111090 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr178 | ||||||||
| Expr8986 | |||||||||
| Expr1021698 | |||||||||
| Expr1037323 | |||||||||
| Expr1147432 | |||||||||
| Expr2009486 | |||||||||
| Expr2027723 | |||||||||
| Drives_construct | WBCnstr00008911 | ||||||||
| WBCnstr00013655 | |||||||||
| WBCnstr00027612 | |||||||||
| Construct_product | WBCnstr00013655 | ||||||||
| WBCnstr00027612 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (106) | |||||||||
| Interaction (55) | |||||||||
| Map_info | Map | III | Position | -0.375386 | Error | 0.000155 | |||
| Positive | Positive_clone | D2007 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (23) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
