WormBase Tree Display for Gene: WBGene00017045
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WBGene00017045 | SMap | S_parent | Sequence | D2007 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 3 | |||||||
Name | CGC_name | atg-13 | Person_evidence | WBPerson649 | |||||
Sequence_name | D2007.5 | ||||||||
Molecular_name | D2007.5 | ||||||||
D2007.5.1 | |||||||||
CE00130 | |||||||||
Other_name | epg-1 | Paper_evidence | WBPaper00033109 | ||||||
CELE_D2007.5 | Accession_evidence | NDB | BX284603 | ||||||
Public_name | atg-13 | ||||||||
DB_info | Database | AceView | gene | 3J246 | |||||
WormQTL | gene | WBGene00017045 | |||||||
WormFlux | gene | WBGene00017045 | |||||||
NDB | locus_tag | CELE_D2007.5 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00017045|UniProtKB=P34379 | |||||||
family | PTHR13430 | ||||||||
NCBI | gene | 176150 | |||||||
RefSeq | protein | NM_066381.6 | |||||||
SwissProt | UniProtAcc | P34379 | |||||||
TREEFAM | TREEFAM_ID | TF321599 | |||||||
UniProt_GCRP | UniProtAcc | P34379 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 29 Feb 2008 11:29:01 | WBPerson2970 | Name_change | CGC_name | atg-13 | ||||
3 | 28 May 2010 15:11:51 | WBPerson2970 | Name_change | Other_name | epg-1 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | atg | ||||||||
Allele (32) | |||||||||
Strain | WBStrain00008601 | ||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation (16) | |||||||||
Contained_in_operon | CEOP3484 | ||||||||
Ortholog (40) | |||||||||
Structured_description | Concise_description | atg-13 encodes a divergent ortholog of the autophagic budding yeast protein Atg13p, and a more obvious ortholog of uncharacterized but well-conserved metazoan proteins such as human KIAA0652; ATG-13 is expressed broadly in early (pre-100-cell stage) embryos, in larval and adult ventral nerve cord and other neurons, and in adult pharyngeal muscle. | Paper_evidence | WBPaper00031598 | |||||
WBPaper00031599 | |||||||||
Curator_confirmed | WBPerson567 | ||||||||
Date_last_updated | 16 Mar 2008 00:00:00 | ||||||||
Automated_description | Predicted to be involved in mitophagy; piecemeal microautophagy of the nucleus; and protein localization to phagophore assembly site. Predicted to be located in cytosol and phagophore assembly site. Predicted to be part of Atg1/ULK1 kinase complex. Expressed in body wall musculature; nerve ring; neurons; and pharyngeal muscle cell. Is an ortholog of human ATG13 (autophagy related 13). | Paper_evidence | WBPaper00065943 | ||||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | D2007.5 | |||||||
Corresponding_transcript | D2007.5.1 | ||||||||
Other_sequence | CRC09367_1 | ||||||||
CBC09408_1 | |||||||||
CRC03976_1 | |||||||||
JI170287.1 | |||||||||
CR05465 | |||||||||
Associated_feature | WBsf651248 | ||||||||
WBsf227086 | |||||||||
Experimental_info (7) | |||||||||
Map_info | Map | III | Position | -0.375386 | Error | 0.000155 | |||
Positive | Positive_clone | D2007 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference (23) | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |