WormBase Tree Display for Gene: WBGene00016930
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| WBGene00016930 | SMap | S_parent | Sequence | C54G6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | madf-6 | Person_evidence | WBPerson260 | |||||
| WBPerson1997 | |||||||||
| Sequence_name | C54G6.1 | ||||||||
| Molecular_name | C54G6.1a | ||||||||
| C54G6.1a.1 | |||||||||
| CE17604 | |||||||||
| C54G6.1b | |||||||||
| CE27886 | |||||||||
| C54G6.1b.1 | |||||||||
| Other_name | C54G6.e | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_C54G6.1 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | madf-6 | ||||||||
| DB_info | Database | AceView | gene | 1B486 | |||||
| WormQTL | gene | WBGene00016930 | |||||||
| WormFlux | gene | WBGene00016930 | |||||||
| NDB | locus_tag | CELE_C54G6.1 | |||||||
| NCBI | gene | 171680 | |||||||
| RefSeq | protein | NM_058406.5 | |||||||
| NM_058405.6 | |||||||||
| TrEMBL | UniProtAcc | Q965K4 | |||||||
| H2KZF9 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KZF9 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 May 2011 14:01:04 | WBPerson2970 | Name_change | CGC_name | madf-6 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | madf | ||||||||
| Allele (85) | |||||||||
| Strain | WBStrain00047513 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (20) | |||||||||
| Structured_description | Automated_description | Enriched in several structures, including AVH; MSaapapa; MSpapapa; germ line; and head mesodermal cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; skn-1; and hsf-1 based on microarray; RNA-seq; and proteomic studies. Is affected by ten chemicals including manganese chloride; stavudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: MADF domain. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C54G6.1a | |||||||
| C54G6.1b | |||||||||
| Corresponding_transcript | C54G6.1a.1 | ||||||||
| C54G6.1b.1 | |||||||||
| Other_sequence | SR03678 | ||||||||
| CRC09981_1 | |||||||||
| CBC13073_1 | |||||||||
| OF01056 | |||||||||
| CR01758 | |||||||||
| MAC01820_1 | |||||||||
| MPC01129_1 | |||||||||
| MPC00626_1 | |||||||||
| Associated_feature | WBsf648925 | ||||||||
| WBsf218947 | |||||||||
| WBsf218948 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030164 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00001941 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00043185 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017678 | ||||||||
| Expr1037263 | |||||||||
| Expr1147163 | |||||||||
| Expr2013343 | |||||||||
| Expr2031575 | |||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (101) | |||||||||
| Interaction | WBInteraction000186684 | ||||||||
| WBInteraction000304568 | |||||||||
| WBInteraction000310484 | |||||||||
| WBInteraction000314007 | |||||||||
| WBInteraction000435306 | |||||||||
| WBInteraction000444009 | |||||||||
| Map_info | Map | I | Position | -17.409 | Error | 0.001843 | |||
| Positive | Positive_clone | C54G6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
