WormBase Tree Display for Gene: WBGene00016866
expand all nodes | collapse all nodes | view schema
| WBGene00016866 | SMap | S_parent | Sequence | C52B9 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | coel-1 | Person_evidence | WBPerson3663 | |||||
| WBPerson2136 | |||||||||
| Sequence_name | C52B9.3 | ||||||||
| Molecular_name | C52B9.3a | ||||||||
| C52B9.3a.1 | |||||||||
| CE04255 | |||||||||
| C52B9.3b | |||||||||
| CE30912 | |||||||||
| C52B9.3b.1 | |||||||||
| Other_name | CELE_C52B9.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | coel-1 | ||||||||
| DB_info | Database | AceView | gene | XE885 | |||||
| WormQTL | gene | WBGene00016866 | |||||||
| WormFlux | gene | WBGene00016866 | |||||||
| NDB | locus_tag | CELE_C52B9.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016866|UniProtKB=H2KYZ5 | |||||||
| family | PTHR15140 | ||||||||
| NCBI | gene | 180700 | |||||||
| RefSeq | protein | NM_171947.7 | |||||||
| NM_171665.6 | |||||||||
| TREEFAM | TREEFAM_ID | TF320819 | |||||||
| TrEMBL | UniProtAcc | H2KYZ5 | |||||||
| Q8IFX8 | |||||||||
| UniProt_GCRP | UniProtAcc | H2KYZ5 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:58 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 20 Feb 2008 16:59:39 | WBPerson2970 | Name_change | CGC_name | coel-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | coel | ||||||||
| Allele (92) | |||||||||
| Strain | WBStrain00036810 | ||||||||
| WBStrain00037576 | |||||||||
| WBStrain00037594 | |||||||||
| WBStrain00037595 | |||||||||
| WBStrain00037636 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00021996 | ||||||||
| 00021997 | |||||||||
| 00021998 | |||||||||
| 00021999 | |||||||||
| 00022000 | |||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00019503 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | coel-1 encodes, by alternative splicing, two isoforms of a putative tubulin-destabilizing protein orthologous to human TBCEL (LRRC35; OMIM:610451), and paralogous to K07H8.1 and human TBCE (OMIM:604934, mutated in HRD); coel-1(tm2136) homozygotes are viable, and COEL-1 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00031580 | |||||
| WBPaper00031581 | |||||||||
| Person_evidence | WBPerson3663 | ||||||||
| WBPerson426 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 12 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable alpha-tubulin binding activity. Predicted to be involved in microtubule cytoskeleton organization; post-chaperonin tubulin folding pathway; and tubulin complex assembly. Predicted to be located in cytoplasm. Expressed in head; tail neurons; and touch receptor neurons. Is an ortholog of human TBCEL (tubulin folding cofactor E like). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C52B9.3a | |||||||
| C52B9.3b | |||||||||
| Corresponding_transcript | C52B9.3a.1 | ||||||||
| C52B9.3b.1 | |||||||||
| Other_sequence (22) | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00030074 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00043013 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00012294 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr11286 | ||||||||
| Expr11326 | |||||||||
| Expr1022956 | |||||||||
| Expr1037236 | |||||||||
| Expr1146977 | |||||||||
| Expr2010287 | |||||||||
| Expr2028529 | |||||||||
| Drives_construct | WBCnstr00018776 | ||||||||
| WBCnstr00027741 | |||||||||
| Construct_product | WBCnstr00018396 | ||||||||
| WBCnstr00027741 | |||||||||
| Microarray_results (26) | |||||||||
| Expression_cluster (214) | |||||||||
| Interaction (16) | |||||||||
| Map_info | Map | X | Position | -7.822 | Error | 0.007713 | |||
| Positive | Positive_clone | C52B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00037299 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00039169 | |||||||||
| WBPaper00043678 | |||||||||
| WBPaper00044287 | |||||||||
| WBPaper00044649 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
