WormBase Tree Display for Gene: WBGene00016866
expand all nodes | collapse all nodes | view schema
WBGene00016866 | SMap | S_parent | Sequence | C52B9 | |||
---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||
Name | CGC_name | coel-1 | Person_evidence | WBPerson3663 | |||
WBPerson2136 | |||||||
Sequence_name | C52B9.3 | ||||||
Molecular_name | C52B9.3a | ||||||
C52B9.3a.1 | |||||||
CE04255 | |||||||
C52B9.3b | |||||||
CE30912 | |||||||
C52B9.3b.1 | |||||||
Other_name | CELE_C52B9.3 | Accession_evidence | NDB | BX284606 | |||
Public_name | coel-1 | ||||||
DB_info | Database | AceView | gene | XE885 | |||
WormQTL | gene | WBGene00016866 | |||||
WormFlux | gene | WBGene00016866 | |||||
NDB | locus_tag | CELE_C52B9.3 | |||||
Panther | gene | CAEEL|WormBase=WBGene00016866|UniProtKB=H2KYZ5 | |||||
family | PTHR15140 | ||||||
NCBI | gene | 180700 | |||||
RefSeq | protein | NM_171947.7 | |||||
NM_171665.6 | |||||||
TREEFAM | TREEFAM_ID | TF320819 | |||||
TrEMBL | UniProtAcc | H2KYZ5 | |||||
Q8IFX8 | |||||||
UniProt_GCRP | UniProtAcc | H2KYZ5 | |||||
Species | Caenorhabditis elegans | ||||||
History | Version_change (2) | ||||||
Status | Live | ||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | coel | ||||||
Allele (92) | |||||||
Strain | WBStrain00036810 | ||||||
WBStrain00037576 | |||||||
WBStrain00037594 | |||||||
WBStrain00037595 | |||||||
WBStrain00037636 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00021996 | ||||||
00021997 | |||||||
00021998 | |||||||
00021999 | |||||||
00022000 | |||||||
Ortholog (35) | |||||||
Paralog | WBGene00019503 | Caenorhabditis elegans | From_analysis | Panther | |||
WormBase-Compara | |||||||
Structured_description | Concise_description | coel-1 encodes, by alternative splicing, two isoforms of a putative tubulin-destabilizing protein orthologous to human TBCEL (LRRC35; OMIM:610451), and paralogous to K07H8.1 and human TBCE (OMIM:604934, mutated in HRD); coel-1(tm2136) homozygotes are viable, and COEL-1 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00031580 | |||
WBPaper00031581 | |||||||
Person_evidence | WBPerson3663 | ||||||
WBPerson426 | |||||||
Curator_confirmed | WBPerson567 | ||||||
Date_last_updated | 12 Mar 2008 00:00:00 | ||||||
Automated_description | Predicted to enable alpha-tubulin binding activity. Predicted to be involved in microtubule cytoskeleton organization; post-chaperonin tubulin folding pathway; and tubulin complex assembly. Predicted to be located in cytoplasm. Expressed in head; tail neurons; and touch receptor neurons. Is an ortholog of human TBCEL (tubulin folding cofactor E like). | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | C52B9.3a | |||||
C52B9.3b | |||||||
Corresponding_transcript | C52B9.3a.1 | ||||||
C52B9.3b.1 | |||||||
Other_sequence (22) | |||||||
Associated_feature (13) | |||||||
Experimental_info | RNAi_result | WBRNAi00030074 | Inferred_automatically | RNAi_primary | |||
WBRNAi00043013 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00012294 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr11286 | ||||||
Expr11326 | |||||||
Expr1022956 | |||||||
Expr1037236 | |||||||
Expr1146977 | |||||||
Expr2010287 | |||||||
Expr2028529 | |||||||
Drives_construct | WBCnstr00018776 | ||||||
WBCnstr00027741 | |||||||
Construct_product | WBCnstr00018396 | ||||||
WBCnstr00027741 | |||||||
Microarray_results (26) | |||||||
Expression_cluster (214) | |||||||
Interaction (16) | |||||||
Map_info | Map | X | Position | -7.822 | Error | 0.007713 | |
Positive | Positive_clone | C52B9 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00037299 | ||||||
WBPaper00038491 | |||||||
WBPaper00039169 | |||||||
WBPaper00043678 | |||||||
WBPaper00044287 | |||||||
WBPaper00044649 | |||||||
WBPaper00055090 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |