WormBase Tree Display for Gene: WBGene00016395
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| WBGene00016395 | SMap | S_parent | Sequence | C34B2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | spcs-1 | |||||||
| Sequence_name | C34B2.10 | ||||||||
| Molecular_name | C34B2.10 | ||||||||
| C34B2.10.1 | |||||||||
| CE16898 | |||||||||
| Other_name | phi-56 | Person_evidence | WBPerson2582 | ||||||
| CELE_C34B2.10 | Accession_evidence | NDB | BX284601 | ||||||
| Public_name | spcs-1 | ||||||||
| DB_info | Database | AceView | gene | 1L258 | |||||
| WormQTL | gene | WBGene00016395 | |||||||
| WormFlux | gene | WBGene00016395 | |||||||
| NDB | locus_tag | CELE_C34B2.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00016395|UniProtKB=O44953 | |||||||
| family | PTHR13202 | ||||||||
| NCBI | gene | 172967 | |||||||
| RefSeq | protein | NM_060396.6 | |||||||
| SwissProt | UniProtAcc | O44953 | |||||||
| TREEFAM | TREEFAM_ID | TF106122 | |||||||
| UniProt_GCRP | UniProtAcc | O44953 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 17 Mar 2005 13:54:35 | WBPerson2970 | Name_change | Other_name | phi-56 | ||||
| 3 | 12 Nov 2018 16:28:49 | WBPerson1983 | Name_change | CGC_name | spcs-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spcs | ||||||||
| Allele (11) | |||||||||
| Strain | WBStrain00040382 | ||||||||
| WBStrain00040383 | |||||||||
| WBStrain00047672 | |||||||||
| WBStrain00051916 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP1636 | ||||||||
| Ortholog (32) | |||||||||
| Structured_description | Concise_description | C34B2.10 encodes a signal peptidase homologous to the 12-kDa subunit (SP12) of the endoplasmic reticulum (ER) signal peptidase; C34B2.10 reporter fusion proteins, commonly referred to as SP12 reporter fusions, localize to the endoplasmic reticulum, and are frequently used as a molecular marker for the ER; loss of C34B2.10 activity via RNAi results in pharyngeal morphology defects. | Paper_evidence | WBPaper00005269 | |||||
| WBPaper00040399 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 16 Nov 2011 00:00:00 | ||||||||
| Automated_description | Involved in IRE1-mediated unfolded protein response. Located in endoplasmic reticulum. Is an ortholog of human SPCS1 (signal peptidase complex subunit 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C34B2.10 | |||||||
| Corresponding_transcript | C34B2.10.1 | ||||||||
| Other_sequence (30) | |||||||||
| Associated_feature | WBsf649590 | ||||||||
| WBsf649591 | |||||||||
| WBsf220274 | |||||||||
| Experimental_info | RNAi_result (14) | ||||||||
| Expr_pattern | Expr11897 | ||||||||
| Expr1013868 | |||||||||
| Expr1037023 | |||||||||
| Expr1145837 | |||||||||
| Expr2001365 | |||||||||
| Expr2019589 | |||||||||
| Drives_construct | WBCnstr00001384 | ||||||||
| WBCnstr00019720 | |||||||||
| WBCnstr00028106 | |||||||||
| WBCnstr00040126 | |||||||||
| Construct_product | WBCnstr00000917 | ||||||||
| WBCnstr00001384 | |||||||||
| WBCnstr00014923 | |||||||||
| WBCnstr00014927 | |||||||||
| WBCnstr00019720 | |||||||||
| WBCnstr00028106 | |||||||||
| WBCnstr00040126 | |||||||||
| Microarray_results (19) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction (20) | |||||||||
| Map_info | Map | I | Position | 5.0606 | |||||
| Positive | Positive_clone | C34B2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00025163 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00040399 | |||||||||
| WBPaper00047288 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00061328 | |||||||||
| WBPaper00064339 | |||||||||
| WBPaper00064661 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
