WormBase Tree Display for Gene: WBGene00016260
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| WBGene00016260 | SMap | S_parent | Sequence | CHROMOSOME_I | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | rege-1 | Paper_evidence | WBPaper00050279 | |||||
| Person_evidence | WBPerson2117 | ||||||||
| Sequence_name | C30F12.1 | ||||||||
| Molecular_name | C30F12.1 | ||||||||
| C30F12.1.1 | |||||||||
| CE40689 | |||||||||
| Other_name | CELE_C30F12.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | rege-1 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Jan 2007 14:06:42 | WBPerson1849 | Event | Acquires_merge | WBGene00020405 | ||||
| 3 | 14 Oct 2016 15:17:08 | WBPerson2970 | Name_change | CGC_name | rege-1 | ||||
| Acquires_merge | WBGene00020405 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | rege | ||||||||
| Allele (72) | |||||||||
| Strain | WBStrain00006134 | ||||||||
| WBStrain00001911 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (43) | |||||||||
| Paralog | WBGene00013107 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00016212 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00021998 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00021287 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00022620 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022003 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable RNA endonuclease activity and mRNA binding activity. Predicted to be located in cytoplasmic ribonucleoprotein granule and nucleus. Expressed in tail. Human ortholog(s) of this gene implicated in hepatitis B. Is an ortholog of human ZC3H12A (zinc finger CCCH-type containing 12A); ZC3H12B (zinc finger CCCH-type containing 12B); and ZC3H12C (zinc finger CCCH-type containing 12C). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:2043 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:26259) | ||||
| Molecular_info | Corresponding_CDS | C30F12.1 | |||||||
| Corresponding_CDS_history | C30F12.1:wp101 | ||||||||
| C30F12.1:wp171 | |||||||||
| Corresponding_transcript | C30F12.1.1 | ||||||||
| Other_sequence (18) | |||||||||
| Associated_feature | WBsf047556 | ||||||||
| WBsf664378 | |||||||||
| WBsf664379 | |||||||||
| WBsf716660 | |||||||||
| WBsf717514 | |||||||||
| WBsf984038 | |||||||||
| WBsf984039 | |||||||||
| WBsf984040 | |||||||||
| WBsf1010012 | |||||||||
| WBsf219659 | |||||||||
| Transcription_factor | WBTranscriptionFactor000585 | ||||||||
| Experimental_info | RNAi_result (24) | ||||||||
| Expr_pattern | Expr5383 | ||||||||
| Expr5384 | |||||||||
| Expr5385 | |||||||||
| Expr13167 | |||||||||
| Expr1018877 | |||||||||
| Expr1036955 | |||||||||
| Expr1145564 | |||||||||
| Expr2015294 | |||||||||
| Expr2033528 | |||||||||
| Drives_construct | WBCnstr00001927 | ||||||||
| WBCnstr00002700 | |||||||||
| WBCnstr00004399 | |||||||||
| WBCnstr00038593 | |||||||||
| Construct_product | WBCnstr00038593 | ||||||||
| Regulate_expr_cluster | WBPaper00065877:rege-1(imm070)_downregulated_OP50 | ||||||||
| WBPaper00065877:rege-1(imm070)_downregulated_PA14 | |||||||||
| WBPaper00065877:rege-1(imm070)_upregulated_OP50 | |||||||||
| WBPaper00065877:rege-1(imm070)_upregulated_PA14 | |||||||||
| Antibody | WBAntibody00002721 | ||||||||
| WBAntibody00003036 | |||||||||
| Microarray_results (30) | |||||||||
| Expression_cluster (154) | |||||||||
| Interaction | WBInteraction000047694 | ||||||||
| WBInteraction000211459 | |||||||||
| WBInteraction000252489 | |||||||||
| WBInteraction000293441 | |||||||||
| WBInteraction000344340 | |||||||||
| WBInteraction000449574 | |||||||||
| WBInteraction000513327 | |||||||||
| Map_info | Map | I | Position | 1.57335 | |||||
| Positive | Positive_clone | C30F12 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (19) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
