WormBase Tree Display for Gene: WBGene00016201
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| WBGene00016201 | SMap | S_parent | Sequence | C28H8 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | tdo-2 | Person_evidence | WBPerson1519 | |||||
| WBPerson2582 | |||||||||
| Sequence_name | C28H8.11 | ||||||||
| Molecular_name | C28H8.11a | ||||||||
| C28H8.11a.1 | |||||||||
| CE01822 | |||||||||
| C28H8.11c | |||||||||
| CE39680 | |||||||||
| C28H8.11b | |||||||||
| C28H8.11c.1 | |||||||||
| Other_name | CELE_C28H8.11 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | tdo-2 | ||||||||
| DB_info | Database (14) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 31 Aug 2012 11:56:39 | WBPerson2970 | Name_change | CGC_name | tdo-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | tdo | ||||||||
| Allele (35) | |||||||||
| Strain | WBStrain00002350 | ||||||||
| WBStrain00001238 | |||||||||
| WBStrain00001507 | |||||||||
| WBStrain00001635 | |||||||||
| WBStrain00030539 | |||||||||
| WBStrain00030538 | |||||||||
| WBStrain00030540 | |||||||||
| WBStrain00047458 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (20) | |||||||||
| Ortholog (33) | |||||||||
| Structured_description | Automated_description | Predicted to enable heme binding activity and tryptophan 2,3-dioxygenase activity. Predicted to be involved in tryptophan catabolic process to acetyl-CoA. Human ortholog(s) of this gene implicated in Gilles de la Tourette syndrome and familial hypertryptophanemia. Is an ortholog of human TDO2 (tryptophan 2,3-dioxygenase). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:11119 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11708) | ||||
| DOID:0111703 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11708) | ||||||
| Molecular_info | Corresponding_CDS | C28H8.11a | |||||||
| C28H8.11c | |||||||||
| Corresponding_CDS_history | C28H8.11b:wp252 | ||||||||
| Corresponding_transcript | C28H8.11b | ||||||||
| C28H8.11a.1 | |||||||||
| C28H8.11c.1 | |||||||||
| Other_sequence (37) | |||||||||
| Associated_feature | WBsf651085 | ||||||||
| WBsf651086 | |||||||||
| WBsf992575 | |||||||||
| WBsf992576 | |||||||||
| WBsf1014982 | |||||||||
| WBsf226737 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00064449 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005315 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011310 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00027193 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041426 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00024663 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (12) | |||||||||
| Drives_construct | WBCnstr00002130 | ||||||||
| WBCnstr00002131 | |||||||||
| WBCnstr00002474 | |||||||||
| WBCnstr00004227 | |||||||||
| WBCnstr00004228 | |||||||||
| WBCnstr00028249 | |||||||||
| Construct_product | WBCnstr00016476 | ||||||||
| WBCnstr00028249 | |||||||||
| Antibody | WBAntibody00002710 | ||||||||
| Microarray_results (36) | |||||||||
| Expression_cluster (204) | |||||||||
| Interaction (40) | |||||||||
| Map_info | Map | III | Position | -1.43491 | |||||
| Positive | Positive_clone | C28H8 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00049828 | |||||||||
| WBPaper00050548 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064186 | |||||||||
| WBPaper00064989 | |||||||||
| WBPaper00066248 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
