WormBase Tree Display for Gene: WBGene00016162
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| WBGene00016162 | SMap | S_parent | Sequence | C27D6 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | crh-2 | Person_evidence | WBPerson625 | |||||
| WBPerson567 | |||||||||
| WBPerson2812 | |||||||||
| Sequence_name | C27D6.4 | ||||||||
| Molecular_name (12) | |||||||||
| Other_name | CELE_C27D6.4 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | crh-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 26 Apr 2011 16:30:24 | WBPerson2970 | Name_change | CGC_name | crh-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | crh | ||||||||
| Allele (122) | |||||||||
| Strain | WBStrain00002482 | ||||||||
| WBStrain00003552 | |||||||||
| WBStrain00037697 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (11) | |||||||||
| Ortholog (31) | |||||||||
| Paralog | WBGene00000222 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00000793 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00002783 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and cAMP response element binding activity. Involved in defense response to Gram-negative bacterium; positive regulation of dauer entry; and regulation of gene expression. Predicted to be located in nucleus. Expressed in body wall musculature; seam cell; spermatheca; and tail. Human ortholog(s) of this gene implicated in osteogenesis imperfecta type 16; prostate adenocarcinoma; and prostate carcinoma in situ. Is an ortholog of human CREB3L1 (cAMP responsive element binding protein 3 like 1) and CREB3L2 (cAMP responsive element binding protein 3 like 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0110345 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18856) | ||||
| DOID:8634 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18854) | ||||||
| DOID:2526 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18854) | ||||||
| Molecular_info | Corresponding_CDS | C27D6.4a | |||||||
| C27D6.4b | |||||||||
| C27D6.4c | |||||||||
| C27D6.4d | |||||||||
| Corresponding_CDS_history | C27D6.4a:wp88 | ||||||||
| C27D6.4b:wp88 | |||||||||
| C27D6.4c:wp88 | |||||||||
| C27D6.4c:wp238 | |||||||||
| Corresponding_transcript | C27D6.4a.1 | ||||||||
| C27D6.4b.1 | |||||||||
| C27D6.4c.1 | |||||||||
| C27D6.4d.1 | |||||||||
| Other_sequence (13) | |||||||||
| Associated_feature (22) | |||||||||
| Gene_product_binds (376) | |||||||||
| Transcription_factor | WBTranscriptionFactor000319 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00011256 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00011620 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092881 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041346 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00011257 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00041345 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00092155 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00090568 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (13) | |||||||||
| Drives_construct | WBCnstr00003072 | ||||||||
| WBCnstr00004526 | |||||||||
| WBCnstr00004531 | |||||||||
| WBCnstr00028283 | |||||||||
| Construct_product | WBCnstr00016813 | ||||||||
| WBCnstr00017350 | |||||||||
| WBCnstr00028283 | |||||||||
| Microarray_results (43) | |||||||||
| Expression_cluster (97) | |||||||||
| Interaction (35) | |||||||||
| Map_info | Map | II | Position | -1.94895 | Error | 0.002445 | |||
| Positive | Positive_clone | C27D6 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00027076 | ||||||||
| WBPaper00031111 | |||||||||
| WBPaper00038491 | |||||||||
| WBPaper00041549 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00058109 | |||||||||
| WBPaper00059852 | |||||||||
| WBPaper00060467 | |||||||||
| WBPaper00061738 | |||||||||
| WBPaper00064315 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
