WormBase Tree Display for Gene: WBGene00016151
expand all nodes | collapse all nodes | view schema
| WBGene00016151 | SMap | S_parent | Sequence | C27A2 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | smc-5 | Person_evidence | WBPerson203 | |||||
| WBPerson98 | |||||||||
| Sequence_name | C27A2.1 | ||||||||
| Molecular_name | C27A2.1 | ||||||||
| C27A2.1.1 | |||||||||
| CE27096 | |||||||||
| Other_name | CELE_C27A2.1 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | smc-5 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:57 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 25 May 2010 11:49:54 | WBPerson2970 | Name_change | CGC_name | smc-5 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smc | ||||||||
| Allele (68) | |||||||||
| Strain | WBStrain00032561 | ||||||||
| WBStrain00040713 | |||||||||
| WBStrain00040715 | |||||||||
| WBStrain00003815 | |||||||||
| WBStrain00003816 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (22) | |||||||||
| Ortholog (51) | |||||||||
| Paralog | WBGene00007694 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00010056 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Automated_description | Predicted to enable single-stranded DNA binding activity. Involved in meiotic DNA double-strand break processing involved in reciprocal meiotic recombination. Located in condensed nuclear chromosome. Expressed in germ line. Human ortholog(s) of this gene implicated in mosaic variegated aneuploidy syndrome. Is an ortholog of human SMC5 (structural maintenance of chromosomes 5). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0080688 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20465) | ||||
| Molecular_info | Corresponding_CDS | C27A2.1 | |||||||
| Corresponding_transcript | C27A2.1.1 | ||||||||
| Other_sequence (28) | |||||||||
| Associated_feature | WBsf221224 | ||||||||
| WBsf221225 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00041301 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00077952 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00007792 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9093 | ||||||||
| Expr1029115 | |||||||||
| Expr1036910 | |||||||||
| Expr1145341 | |||||||||
| Expr2015900 | |||||||||
| Expr2034133 | |||||||||
| Drives_construct | WBCnstr00028288 | ||||||||
| Construct_product | WBCnstr00028288 | ||||||||
| Antibody | WBAntibody00002149 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (160) | |||||||||
| Interaction (52) | |||||||||
| Map_info | Map | II | Position | -2.55323 | Error | 0.005652 | |||
| Positive | Positive_clone | C27A2 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00036709 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00044667 | |||||||||
| WBPaper00044981 | |||||||||
| WBPaper00049394 | |||||||||
| WBPaper00049396 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00057646 | |||||||||
| WBPaper00059317 | |||||||||
| WBPaper00065893 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
