WormBase Tree Display for Gene: WBGene00015975
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| WBGene00015975 | SMap | S_parent | Sequence | C18E3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cas-2 | Person_evidence | WBPerson95 | |||||
| Sequence_name | C18E3.6 | ||||||||
| Molecular_name | C18E3.6a | ||||||||
| C18E3.6a.1 | |||||||||
| CE27714 | |||||||||
| C18E3.6b | |||||||||
| CE49852 | |||||||||
| C18E3.6b.1 | |||||||||
| C18E3.6c | |||||||||
| Other_name | CELE_C18E3.6 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | cas-2 | ||||||||
| DB_info | Database (11) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Oct 2007 08:52:24 | WBPerson2970 | Name_change | CGC_name | cas-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cas | ||||||||
| Allele (61) | |||||||||
| Strain | WBStrain00032161 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (12) | |||||||||
| Contained_in_operon | CEOP1152 | ||||||||
| Ortholog (41) | |||||||||
| Paralog | WBGene00000294 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00022028 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enables adenyl-nucleotide exchange factor activity. Involved in regulation of actin filament polymerization. Predicted to be located in cytoplasm. Human ortholog(s) of this gene implicated in pancreatic cancer. Is an ortholog of human CAP1 (cyclase associated actin cytoskeleton regulatory protein 1) and CAP2 (cyclase associated actin cytoskeleton regulatory protein 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:1793 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20040) | ||||
| DOID:12930 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:20039) | ||||||
| Molecular_info | Corresponding_CDS | C18E3.6a | |||||||
| C18E3.6b | |||||||||
| Corresponding_CDS_history | C18E3.6:wp93 | ||||||||
| Corresponding_transcript | C18E3.6c | ||||||||
| C18E3.6a.1 | |||||||||
| C18E3.6b.1 | |||||||||
| Other_sequence (12) | |||||||||
| Associated_feature | WBsf217496 | ||||||||
| WBsf217497 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00029078 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00117035 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040941 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002989 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00114660 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00095808 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057898 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00000408 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1025857 | ||||||||
| Expr1036829 | |||||||||
| Expr1144987 | |||||||||
| Expr2009723 | |||||||||
| Expr2027962 | |||||||||
| Drives_construct | WBCnstr00028409 | ||||||||
| Construct_product | WBCnstr00028409 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (118) | |||||||||
| SAGE_tag | SAGE:aatatgtgcg | Strand | Sense | ||||||
| Unambiguously_mapped | |||||||||
| SAGE:catccaaggc | Strand | Antisense | |||||||
| SAGE:agttctttga | Strand | Antisense | |||||||
| SAGE:ctgagtcttc | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:actaggagtctattttt | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| SAGE:catccaaggcgattcaa | Strand | Antisense | |||||||
| SAGE:aatatgtgcgacaacat | Strand | Sense | |||||||
| Unambiguously_mapped | |||||||||
| Interaction (29) | |||||||||
| Map_info | Map | I | Position | -1.61175 | Error | 0.006372 | |||
| Positive | Positive_clone | C18E3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00042407 | |||||||||
| WBPaper00050235 | |||||||||
| WBPaper00051469 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
