WormBase Tree Display for Gene: WBGene00015806
expand all nodes | collapse all nodes | view schema
| WBGene00015806 | SMap | S_parent | Sequence | C16A3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | smrc-1 | Person_evidence | WBPerson2156 | |||||
| Sequence_name | C16A3.1 | ||||||||
| Molecular_name | C16A3.1a | ||||||||
| C16A3.1a.1 | |||||||||
| CE27688 | |||||||||
| C16A3.1b | |||||||||
| CE30605 | |||||||||
| C16A3.1c | |||||||||
| CE30606 | |||||||||
| C16A3.1b.1 | |||||||||
| C16A3.1c.1 | |||||||||
| Other_name | CELE_C16A3.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | smrc-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 30 Nov 2015 15:03:18 | WBPerson2970 | Name_change | CGC_name | smrc-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | smrc | ||||||||
| Allele (40) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (16) | |||||||||
| Contained_in_operon | CEOP3368 | ||||||||
| Ortholog (39) | |||||||||
| Paralog (19) | |||||||||
| Structured_description | Concise_description | C16A3.1 is orthologous to the human gene SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily A-like protein 1 (SMARCAL1); SMARCAL1 is involved in the remodeling of chromatin. | Curator_confirmed | WBPerson324 | |||||
| WBPerson1823 | |||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 21 May 2013 00:00:00 | ||||||||
| Automated_description | Predicted to enable ATP-dependent DNA/DNA annealing activity. Predicted to be involved in DNA repair; regulation of transcription by RNA polymerase II; and replication fork processing. Predicted to be located in nuclear replication fork. Expressed in male. Human ortholog(s) of this gene implicated in Schimke immuno-osseous dysplasia. Is an ortholog of human SMARCAL1 (SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0060490 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:11102) | ||||
| Disease_relevance | Mutations in human SMARCAL1 (SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily A-like protein 1) have been implicated in Schimke immunoosseous dysplasia, an autosomal recessive disorder with the diagnostic features of spondyloepiphyseal dysplasia, renal dysfunction, and T-cell immunodeficiency. | Homo sapiens | Accession_evidence | OMIM | 242900 | ||||
| 606622 | |||||||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 28 May 2013 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C16A3.1a | |||||||
| C16A3.1b | |||||||||
| C16A3.1c | |||||||||
| Corresponding_transcript | C16A3.1a.1 | ||||||||
| C16A3.1b.1 | |||||||||
| C16A3.1c.1 | |||||||||
| Other_sequence (38) | |||||||||
| Associated_feature | WBsf992743 | ||||||||
| WBsf225098 | |||||||||
| WBsf225099 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00075543 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00010815 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00096568 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00005208 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040652 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00096485 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028942 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081565 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00096319 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00096402 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14303 | ||||||||
| Expr1021311 | |||||||||
| Expr1036765 | |||||||||
| Expr1144705 | |||||||||
| Expr2015925 | |||||||||
| Expr2034158 | |||||||||
| Drives_construct | WBCnstr00028551 | ||||||||
| Construct_product | WBCnstr00028551 | ||||||||
| Microarray_results (27) | |||||||||
| Expression_cluster (79) | |||||||||
| Interaction | WBInteraction000379176 | ||||||||
| WBInteraction000560288 | |||||||||
| WBInteraction000560289 | |||||||||
| WBInteraction000575469 | |||||||||
| WBInteraction000582453 | |||||||||
| Map_info | Positive | Positive_clone | C16A3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -1.30835 | |||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00052040 | |||||||||
| WBPaper00052352 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056269 | |||||||||
| WBPaper00065308 | |||||||||
| Method | Gene |
