WormBase Tree Display for Gene: WBGene00015789

WBGene00015789 SMap: S_parent: Sequence: C15C7
  Identity: Version: 2
    Name: CGC_name: syx-6 Person_evidence: WBPerson3132
      Sequence_name: C15C7.1
      Molecular_name: C15C7.1
        C15C7.1.1
        CE30865
      Other_name: CELE_C15C7.1 Accession_evidence: NDB BX284606
      Public_name: syx-6
    DB_info: Database: AceView gene XD783
        WormQTL gene WBGene00015789
        WormFlux gene WBGene00015789
        NDB locus_tag CELE_C15C7.1
        Panther gene CAEEL|WormBase=WBGene00015789|UniProtKB=P83528
          family PTHR12791
        NCBI gene 259698
        RefSeq protein NM_001392741.1
        SwissProt UniProtAcc P83528
        TREEFAM TREEFAM_ID TF313254
        UniProt_GCRP UniProtAcc P83528
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 16 Apr 2010 14:03:06 WBPerson2970 Name_change: CGC_name: syx-6
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: syx
    Allele (20)
    Strain: WBStrain00001363
      WBStrain00002195
    RNASeq_FPKM (74)
    GO_annotation: 00048848
      00048849
      00048850
      00048851
      00048852
      00048853
      00048854
      00048855
    Contained_in_operon: CEOPX040
    Ortholog: WBGene00130354 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00222475 Brugia malayi From_analysis: WormBase-Compara
      CSP21.g8518 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g12360 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g18987 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15607 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8607 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g16730 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8385 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP40.g9161 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00076.g3531 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-syx-6 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16522 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Pan_g21265 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0274700 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g18713 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00239566 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00304639 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00263954 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289523 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0037084 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            PhylomeDB
      ZFIN:ZDB-GENE-030131-858 Danio rerio From_analysis: OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-041111-53 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      HGNC:11428 Homo sapiens From_analysis: EnsEMBL-Compara
            OrthoFinder
            OrthoInspector
            PhylomeDB
      HGNC:11441 Homo sapiens From_analysis: OrthoFinder
            OrthoInspector
            PhylomeDB
      MGI:1926235 Mus musculus From_analysis: OrthoFinder
            OrthoInspector
            PhylomeDB
      RGD:61915 Rattus norvegicus From_analysis: OrthoFinder
            OrthoInspector
            PhylomeDB
    Paralog: WBGene00043064 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Predicted to be involved in synaptic vesicle docking. Located in Golgi trans cisterna. Expressed in head. Is an ortholog of human STX10 (syntaxin 10). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C15C7.1
    Corresponding_transcript: C15C7.1.1
    Other_sequence (25)
    Associated_feature: WBsf034315
      WBsf662584
      WBsf1004536
      WBsf235456
  Experimental_info: RNAi_result: WBRNAi00040594 Inferred_automatically: RNAi_primary
      WBRNAi00110491 Inferred_automatically: RNAi_primary
      WBRNAi00110506 Inferred_automatically: RNAi_primary
      WBRNAi00110520 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram1446
      Expr4832
      Expr5267
      Expr5268
      Expr13818
      Expr1025910
      Expr1036755
      Expr1144649
      Expr2017196
      Expr2035332
    Drives_construct: WBCnstr00002253
      WBCnstr00004271
      WBCnstr00012263
      WBCnstr00028567
    Construct_product: WBCnstr00019191
      WBCnstr00028567
      WBCnstr00040136
    Microarray_results (13)
    Expression_cluster (82)
    Interaction (24)
  Map_info: Map: X Position: -11.6777 Error: 0.112361
    Positive: Positive_clone: C15C7 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00010295
    WBPaper00018596
    WBPaper00030963
    WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene