WormBase Tree Display for Gene: WBGene00015789
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WBGene00015789 | SMap | S_parent | Sequence | C15C7 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | syx-6 | Person_evidence | WBPerson3132 | |||||
Sequence_name | C15C7.1 | ||||||||
Molecular_name | C15C7.1 | ||||||||
C15C7.1.1 | |||||||||
CE30865 | |||||||||
Other_name | CELE_C15C7.1 | Accession_evidence | NDB | BX284606 | |||||
Public_name | syx-6 | ||||||||
DB_info | Database | AceView | gene | XD783 | |||||
WormQTL | gene | WBGene00015789 | |||||||
WormFlux | gene | WBGene00015789 | |||||||
NDB | locus_tag | CELE_C15C7.1 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00015789|UniProtKB=P83528 | |||||||
family | PTHR12791 | ||||||||
NCBI | gene | 259698 | |||||||
RefSeq | protein | NM_001392741.1 | |||||||
SwissProt | UniProtAcc | P83528 | |||||||
TREEFAM | TREEFAM_ID | TF313254 | |||||||
UniProt_GCRP | UniProtAcc | P83528 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 16 Apr 2010 14:03:06 | WBPerson2970 | Name_change | CGC_name | syx-6 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | syx | ||||||||
Allele | WBVar01131892 | ||||||||
WBVar01131893 | |||||||||
WBVar01131894 | |||||||||
WBVar01131895 | |||||||||
WBVar01131896 | |||||||||
WBVar01131897 | |||||||||
WBVar01131898 | |||||||||
WBVar01131899 | |||||||||
WBVar01131900 | |||||||||
WBVar00498437 | |||||||||
WBVar00498438 | |||||||||
WBVar01131901 | |||||||||
WBVar00498439 | |||||||||
WBVar01131902 | |||||||||
WBVar00498440 | |||||||||
WBVar01499636 | |||||||||
WBVar02152667 | |||||||||
WBVar01822419 | |||||||||
WBVar00296304 | |||||||||
WBVar00274148 | |||||||||
Strain | WBStrain00001363 | ||||||||
WBStrain00002195 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00048848 | ||||||||
00048849 | |||||||||
00048850 | |||||||||
00048851 | |||||||||
00048852 | |||||||||
00048853 | |||||||||
00048854 | |||||||||
00048855 | |||||||||
Contained_in_operon | CEOPX040 | ||||||||
Ortholog (27) | |||||||||
Paralog | WBGene00043064 | Caenorhabditis elegans | From_analysis | Panther | |||||
Structured_description | Automated_description | Predicted to be involved in synaptic vesicle docking. Located in Golgi trans cisterna. Expressed in head. Is an ortholog of human STX10 (syntaxin 10). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | C15C7.1 | |||||||
Corresponding_transcript | C15C7.1.1 | ||||||||
Other_sequence | Tcol_isotig09043 | ||||||||
GR979143.1 | |||||||||
GR979070.1 | |||||||||
GR12920 | |||||||||
AE01376 | |||||||||
SC00164 | |||||||||
FG351842.1 | |||||||||
PSC01866_2 | |||||||||
CJC14825_1 | |||||||||
ES739027.1 | |||||||||
Tcir_isotig10638 | |||||||||
BM536491.1 | |||||||||
AYC00684_1 | |||||||||
GRC01988_1 | |||||||||
GW407590.1 | |||||||||
Tcir_isotig08502 | |||||||||
GW410328.1 | |||||||||
PP00238 | |||||||||
Acan_isotig13070 | |||||||||
Oden_isotig23942 | |||||||||
HBC14644_1 | |||||||||
Tcol_isotig09044 | |||||||||
GR977630.1 | |||||||||
PPC01266_1 | |||||||||
GR978759.1 | |||||||||
Associated_feature | WBsf034315 | ||||||||
WBsf662584 | |||||||||
WBsf1004536 | |||||||||
WBsf235456 | |||||||||
Experimental_info | RNAi_result | WBRNAi00040594 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00110491 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00110506 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00110520 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Chronogram1446 | ||||||||
Expr4832 | |||||||||
Expr5267 | |||||||||
Expr5268 | |||||||||
Expr13818 | |||||||||
Expr1025910 | |||||||||
Expr1036755 | |||||||||
Expr1144649 | |||||||||
Expr2017196 | |||||||||
Expr2035332 | |||||||||
Drives_construct | WBCnstr00002253 | ||||||||
WBCnstr00004271 | |||||||||
WBCnstr00012263 | |||||||||
WBCnstr00028567 | |||||||||
Construct_product | WBCnstr00019191 | ||||||||
WBCnstr00028567 | |||||||||
WBCnstr00040136 | |||||||||
Microarray_results (13) | |||||||||
Expression_cluster (82) | |||||||||
Interaction (24) | |||||||||
Map_info | Map | X | Position | -11.6777 | Error | 0.112361 | |||
Positive | Positive_clone | C15C7 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00010295 | ||||||||
WBPaper00018596 | |||||||||
WBPaper00030963 | |||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |