WormBase Tree Display for Gene: WBGene00015488

WBGene00015488 SMap: S_parent: Sequence: C05D11
  Identity: Version: 1
    Name: Sequence_name: C05D11.13
      Molecular_name: C05D11.13a
        C05D11.13a.1
        CE03930
        C05D11.13b
        CE52586
        C05D11.13a.2
        C05D11.13b.1
        C05D11.13b.2
      Other_name: CELE_C05D11.13 Accession_evidence: NDB BX284603
      Public_name: C05D11.13
    DB_info: Database: AceView gene 3H532
        WormQTL gene WBGene00015488
        WormFlux gene WBGene00015488
        NDB locus_tag CELE_C05D11.13
        NCBI gene 182261
        RefSeq protein NM_066013.4
            NM_001361726.4
        SwissProt UniProtAcc Q11191
        TrEMBL UniProtAcc A0A2K5ATU4
        UniProt_GCRP UniProtAcc Q11191
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (22)
    RNASeq_FPKM (74)
    Ortholog: WBGene00038849 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00122857 Caenorhabditis japonica From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00055487 Caenorhabditis remanei From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00143944 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00029251 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CSP26.g12249 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP40.g3637 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-C05D11.13 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_II.g8206 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_X.g23410 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16128 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00051.g2624 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_16455 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010708 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_30172800 Caenorhabditis inopinata From_analysis: WormBase-Compara
    Structured_description: Automated_description: Enriched in intestine; marginal cell; neurons; and rect_D based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; hsf-1; and sir-2.1 based on RNA-seq and microarray studies. Is affected by rotenone; Alovudine; and Humic Substances based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C05D11.13a
      C05D11.13b
    Corresponding_transcript: C05D11.13a.1
      C05D11.13a.2
      C05D11.13b.1
      C05D11.13b.2
    Associated_feature: WBsf666997
      WBsf226826
      WBsf226827
  Experimental_info: RNAi_result: WBRNAi00028493 Inferred_automatically: RNAi_primary
      WBRNAi00039730 Inferred_automatically: RNAi_primary
      WBRNAi00010196 Inferred_automatically: RNAi_primary
      WBRNAi00005357 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1014260
      Expr1036626
      Expr1143825
      Expr2000460
      Expr2018683
    Drives_construct: WBCnstr00028807
    Construct_product: WBCnstr00028807
    Microarray_results (19)
    Expression_cluster: WBPaper00033070:Rhine_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045420:fertilization_upregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00048988:neuron_expressed
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050801:DPY-21_dauer_regulome
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:isp-1(qm150)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055565:AVK_enriched
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056284:ints-6(t1903)_upregulated
      WBPaper00057140:pptr-1(tm3103)_upregulated
      WBPaper00057288:iff-1(RNAi)_upregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00061340:AVK
      WBPaper00061340:Pharyngeal_marginal_cell
      WBPaper00061340:rect_D
      WBPaper00061340:RIC
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061527:F49E2.5_8378-anc-1_2769
      WBPaper00062103:neuron_enriched
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00064122:vulva_transcriptome
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065158:AFD_enriched
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      cgc4489_group_12
      WBPaper00025032:cluster_93
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00036286:Pattern_B
      WBPaper00037695:LD_3-day
      WBPaper00040858:eQTL_regulated_old
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045263:nuo-6(qm200)_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(143_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SE_pi(143_min)
    Interaction (11)
  Map_info: Positive: Positive_clone: C05D11 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: III -1.26939
  Reference: WBPaper00024926
  Method: Gene