WormBase Tree Display for Gene: WBGene00015480
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| WBGene00015480 | SMap | S_parent | Sequence | C05D10 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | Sequence_name | C05D10.4 | |||||||
| Molecular_name | C05D10.4a | ||||||||
| C05D10.4a.1 | |||||||||
| CE30423 | |||||||||
| C05D10.4b | |||||||||
| CE54101 | |||||||||
| C05D10.4c | |||||||||
| CE30425 | |||||||||
| C05D10.4b.1 | |||||||||
| C05D10.4c.1 | |||||||||
| Other_name | CELE_C05D10.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | C05D10.4 | ||||||||
| DB_info | Database | AceView | gene | 3H178 | |||||
| WormQTL | gene | WBGene00015480 | |||||||
| WormFlux | gene | WBGene00015480 | |||||||
| NDB | locus_tag | CELE_C05D10.4 | |||||||
| NCBI | gene | 175860 | |||||||
| RefSeq | protein | NM_001379743.1 | |||||||
| NM_171149.5 | |||||||||
| NM_065922.6 | |||||||||
| SwissProt | UniProtAcc | Q11181 | |||||||
| UniProt_GCRP | UniProtAcc | Q11181 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (155) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00057372 | ||||||||
| 00057373 | |||||||||
| Ortholog (18) | |||||||||
| Paralog | WBGene00003516 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Automated_description | Enriched in several structures, including ABaraappaa; MSaaaaapa; excretory cell; neurons; and pharyngeal gland cell based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including skn-1; dpy-10; and hsf-1 based on microarray and RNA-seq studies. Is affected by eighteen chemicals including aldicarb; stavudine; and Zidovudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: Sterile alpha motif domain; Sterile alpha motif/pointed domain superfamily; Phosphorylation site; and SAM domain (Sterile alpha motif). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C05D10.4a | |||||||
| C05D10.4b | |||||||||
| C05D10.4c | |||||||||
| Corresponding_CDS_history | C05D10.4b:wp275 | ||||||||
| Corresponding_transcript | C05D10.4a.1 | ||||||||
| C05D10.4b.1 | |||||||||
| C05D10.4c.1 | |||||||||
| Other_sequence (30) | |||||||||
| Associated_feature (34) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00039723 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00005303 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028490 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1022085 | ||||||||
| Expr1036620 | |||||||||
| Expr1143820 | |||||||||
| Expr2000459 | |||||||||
| Expr2018682 | |||||||||
| Drives_construct | WBCnstr00028813 | ||||||||
| Construct_product | WBCnstr00028813 | ||||||||
| Microarray_results (33) | |||||||||
| Expression_cluster (168) | |||||||||
| Interaction | WBInteraction000394983 | ||||||||
| WBInteraction000523687 | |||||||||
| WBInteraction000545878 | |||||||||
| WBInteraction000545916 | |||||||||
| WBInteraction000546012 | |||||||||
| WBInteraction000546087 | |||||||||
| WBInteraction000546402 | |||||||||
| WBInteraction000546475 | |||||||||
| WBInteraction000546828 | |||||||||
| WBInteraction000547101 | |||||||||
| Map_info | Positive | Positive_clone | C05D10 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | -1.42033 | |||||||
| Method | Gene |
