WormBase Tree Display for Gene: WBGene00015440
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| WBGene00015440 | SMap | S_parent | Sequence | C04E12 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | arrd-20 | Person_evidence | WBPerson261 | ||||||
| WBPerson522 | ||||||||||
| Sequence_name | C04E12.11 | |||||||||
| Molecular_name | C04E12.11 | |||||||||
| Other_name | CELE_C04E12.11 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | arrd-20 | |||||||||
| DB_info | Database | AceView | gene | 5D862 | ||||||
| WormQTL | gene | WBGene00015440 | ||||||||
| WormFlux | gene | WBGene00015440 | ||||||||
| NDB | locus_tag | CELE_C04E12.11 | ||||||||
| NCBI | gene | 182216 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | |||
| 2 | 19 Jul 2010 16:45:42 | WBPerson2970 | Name_change | CGC_name | arrd-20 | |||||
| 3 | 18 Feb 2016 15:23:36 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | arrd | |||||||||
| Allele (57) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00131126 | Caenorhabditis japonica | From_analysis | OMA | ||||||
| TreeFam | ||||||||||
| WBGene00086345 | Caenorhabditis remanei | From_analysis | OMA | |||||||
| Inparanoid_8 | ||||||||||
| WBGene00135027 | Caenorhabditis japonica | From_analysis | TreeFam | |||||||
| WBGene00057560 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00086349 | Caenorhabditis remanei | From_analysis | Inparanoid_8 | |||||||
| Paralog (21) | ||||||||||
| Structured_description | Automated_description | Enriched in intestine; neurons; and somatic gonad precursor based on tiling array and RNA-seq studies. Is affected by several genes including daf-12; eat-2; and pgl-1 based on tiling array; microarray; and RNA-seq studies. Is affected by six chemicals including Psoralens; allantoin; and metformin based on RNA-seq and microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | C04E12.11:wp106 | ||||||||
| C04E12.11:wp252 | ||||||||||
| Corresponding_pseudogene | C04E12.11 | |||||||||
| Other_sequence | DA03455 | |||||||||
| Associated_feature | WBsf999606 | |||||||||
| WBsf999607 | ||||||||||
| WBsf1019359 | ||||||||||
| Experimental_info | Expr_pattern | Expr1029114 | ||||||||
| Expr1143695 | ||||||||||
| Microarray_results (12) | ||||||||||
| Expression_cluster (61) | ||||||||||
| Interaction | WBInteraction000114934 | |||||||||
| WBInteraction000203020 | ||||||||||
| WBInteraction000342729 | ||||||||||
| WBInteraction000379152 | ||||||||||
| WBInteraction000393714 | ||||||||||
| WBInteraction000447095 | ||||||||||
| WBInteraction000521122 | ||||||||||
| WBInteraction000548889 | ||||||||||
| Map_info | Map | V | Position | -11.8722 | Error | 0.014782 | ||||
| Positive | Positive_clone | C04E12 | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Reference | WBPaper00038491 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
