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WormBase Tree Display for Gene: WBGene00015395

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Name Class

WBGene00015395SMapS_parentSequenceC03G6
IdentityVersion2
NameCGC_namenhr-147Person_evidenceWBPerson600
Sequence_nameC03G6.8
Molecular_nameC03G6.8
C03G6.8.1
CE45420
C03G6.8.2
Other_nameCELE_C03G6.8Accession_evidenceNDBBX284605
Public_namenhr-147
DB_infoDatabaseAceViewgene5H827
WormQTLgeneWBGene00015395
WormFluxgeneWBGene00015395
NDBlocus_tagCELE_C03G6.8
PanthergeneCAEEL|WormBase=WBGene00015395|UniProtKB=O01448
familyPTHR24083
NCBIgene182170
RefSeqproteinNM_072472.4
TREEFAMTREEFAM_IDTF322854
TrEMBLUniProtAccO01448
UniProt_GCRPUniProtAccO01448
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
222 Jul 2005 10:29:11WBPerson2970Name_changeCGC_namenhr-147
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnhr
Allele (126)
StrainWBStrain00036711
RNASeq_FPKM (74)
GO_annotation (13)
Ortholog (58)
Paralog (42)
Structured_descriptionAutomated_descriptionPredicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC03G6.8
Corresponding_CDS_historyC03G6.8:wp220
Corresponding_transcriptC03G6.8.1
C03G6.8.2
Associated_featureWBsf646932
WBsf978411
WBsf231971
Transcription_factorWBTranscriptionFactor000950
Experimental_infoRNAi_result (13)
Expr_patternExpr1014476
Expr1143657
Expr2014047
Expr2032287
Drives_constructWBCnstr00028878
Construct_productWBCnstr00028878
Microarray_resultsSMD_C03G6.12
SMD_C03G6.8
183651_at
A_12_P117128
A_12_P173302
A_12_P173303
Aff_C03G6.8
GPL13394_WBGene00015395
GPL13914_C03G6.8
GPL14144_C03G6.8_590-649_0.733_94_C
GPL14144_C03G6.8_660-719_0.775_72_B
GPL14144_C03G6.8_906-965_0.956_2_A
GPL19516_CGZ0002204
GPL21109_C03G6.8
GPL3518_CE07882
GPL8304_CE_WBGene00015395_A
GPL8304_CE_WBGene00015395_B
GPL8673_C03G6_8P00048
GPL8673_C03G6_8P00638
GPL8673_C03G6_8P00799
GPL9450_C03G6.8
cea2.i.32500
Expression_clusterWBPaper00032425:down_in_zfp-1
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00038168:lin-35_upregulated
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:E.faecalis_24hr_upregulated_TilingArray
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00042194:Tryptophan_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00044760:germline_specific
WBPaper00045774:clk-1_upregulated
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050801:DPY-21_dauer_regulome
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot267)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053771:up_at_24h-NaCl
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053810:clk-1(qm30)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Metformin_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated_Cadmium
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:set-2(bn129)_upregulated
WBPaper00058969:RIS_depleted
WBPaper00059191:hsp-16.2p-LIN-29_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00060764:swsn-1(os22ts)_upregulated
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061340:hyp7_C_lineage
WBPaper00061340:PVR
WBPaper00061340:P_cell
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061527:xbx-3-DH11.5_20397
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
WBPaper00064509:static-magnetic-field_upregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064721:fasn-1(g14)_downregulated_starved
WBPaper00065096:25C_vs_20C_downregulated
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065841:21_1
WBPaper00065841:33_0
WBPaper00065841:33_1
WBPaper00065841:80_0
WBPaper00066232:ash-2(RNAi)_downregulated_WT
cgc4489_group_9
cgc4489_group_17
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00035227:heat_shock_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Atrazine_regulated
WBPaper00038172:crh-1null_up_regulated
WBPaper00040876:mir-35_upregulated
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00045673:colistin_upregulated
WBPaper00047070:DAF-16-dependent_UV_response
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00050520:lagr-1(gk327);hyl-1(ok976)_upregulated
WBPaper00056330:mrps-5(RNAi)_upregulated
InteractionWBInteraction000234713
WBInteraction000252800
WBInteraction000338612
WBInteraction000344847
WBInteraction000402895
WBInteraction000431169
WBInteraction000439324
WBInteraction000535015
WBInteraction000535063
Map_infoMapVPosition0.68243Error0.002018
PositivePositive_cloneC03G6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene