WormBase Tree Display for Gene: WBGene00015176
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| WBGene00015176 | SMap | S_parent | Sequence | B0414 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vps-51 | Person_evidence | WBPerson3132 | |||||
| Sequence_name | B0414.8 | ||||||||
| Molecular_name | B0414.8a | ||||||||
| B0414.8a.1 | |||||||||
| CE30413 | |||||||||
| B0414.8b | |||||||||
| CE36910 | |||||||||
| B0414.8b.1 | |||||||||
| Other_name | CELE_B0414.8 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | vps-51 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 04 Jan 2010 16:36:03 | WBPerson2970 | Name_change | CGC_name | vps-51 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (35) | |||||||||
| Strain | WBStrain00034980 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (33) | |||||||||
| Contained_in_operon | CEOP1003 | ||||||||
| Ortholog (39) | |||||||||
| Structured_description | Concise_description | vps-51 encodes the C. elegans ortholog of the yeast Vps51p GARP (Golgi associated retrograde protein) complex subunit; in C. elegans, VPS-51 forms a GARP complex with VPS-52, VPS-53, and VPS-54; vps-51 is ubiquitously expressed, with particularly strong expression seen in neurons. | Paper_evidence | WBPaper00038455 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 13 Jan 2012 00:00:00 | ||||||||
| Automated_description | Enables syntaxin binding activity. Involved in negative regulation of dense core granule transport; positive regulation of dense core granule transport; and positive regulation of locomotion involved in locomotory behavior. Part of GARP complex. Expressed in body wall musculature; intestinal cell; and neurons. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia type 13. Is an ortholog of human VPS51 (VPS51 subunit of GARP complex). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0112332 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:1172) | ||||
| Molecular_info | Corresponding_CDS | B0414.8a | |||||||
| B0414.8b | |||||||||
| Corresponding_CDS_history | B0414.8:wp126 | ||||||||
| Corresponding_transcript | B0414.8a.1 | ||||||||
| B0414.8b.1 | |||||||||
| Other_sequence (48) | |||||||||
| Associated_feature | WBsf649190 | ||||||||
| WBsf664278 | |||||||||
| WBsf219485 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00002858 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00039043 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00085078 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028135 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00117031 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00076054 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00062092 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr9332 | ||||||||
| Expr9335 | |||||||||
| Expr1026287 | |||||||||
| Expr1036498 | |||||||||
| Expr1143203 | |||||||||
| Expr1200264 | |||||||||
| Expr2018034 | |||||||||
| Expr2036171 | |||||||||
| Drives_construct | WBCnstr00013908 | ||||||||
| WBCnstr00029029 | |||||||||
| Construct_product | WBCnstr00029029 | ||||||||
| Microarray_results (23) | |||||||||
| Expression_cluster (83) | |||||||||
| Interaction (72) | |||||||||
| Map_info | Map | I | Position | 0.457332 | Error | 0.001591 | |||
| Positive | Positive_clone | B0414 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038455 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064339 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
