WormBase Tree Display for Gene: WBGene00015052
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WBGene00015052 | SMap | S_parent | Sequence | B0218 | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | clec | ||||||
Allele (26) | |||||||
Strain | WBStrain00033921 | ||||||
WBStrain00001296 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation | 00058204 | ||||||
00058205 | |||||||
Ortholog (54) | |||||||
Paralog | WBGene00007565 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00012251 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00012253 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00015050 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00020191 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||
Panther | |||||||
WormBase-Compara | |||||||
WBGene00018246 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00020585 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00007820 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00008203 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00010228 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00014137 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
WBGene00015631 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Automated_description | Predicted to enable signaling receptor activity. Involved in defense response to Gram-positive bacterium. Human ortholog(s) of this gene implicated in hepatocellular carcinoma and liver cirrhosis. Is an ortholog of several human genes including LY75 (lymphocyte antigen 75); MRC2 (mannose receptor C type 2); and REG3A (regenerating family member 3 alpha). | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Disease_info | Potential_model | DOID:5082 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8601) | ||
DOID:684 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:8601) | ||||
Molecular_info | Corresponding_CDS | B0218.8 | |||||
Corresponding_transcript | B0218.8.1 | ||||||
Other_sequence | PT03782 | ||||||
PTC03364_1 | |||||||
Associated_feature | WBsf716782 | ||||||
WBsf230393 | |||||||
Experimental_info | RNAi_result | WBRNAi00075898 | Inferred_automatically | RNAi_primary | |||
WBRNAi00009595 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00088967 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00082463 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00038750 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00090635 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00028003 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Chronogram168 | ||||||
Chronogram2060 | |||||||
Expr3788 | |||||||
Expr5021 | |||||||
Expr1013493 | |||||||
Expr1142960 | |||||||
Expr2010185 | |||||||
Expr2028427 | |||||||
Drives_construct | WBCnstr00001072 | ||||||
WBCnstr00002188 | |||||||
WBCnstr00002189 | |||||||
WBCnstr00011659 | |||||||
WBCnstr00029125 | |||||||
Construct_product | WBCnstr00029125 | ||||||
Microarray_results (16) | |||||||
Expression_cluster (352) | |||||||
Interaction (32) | |||||||
Map_info | Map | IV | Position | 3.64812 | Error | 0.000615 | |
Positive | Positive_clone | B0218 | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference | WBPaper00026980 | ||||||
WBPaper00032331 | |||||||
WBPaper00038491 | |||||||
WBPaper00055090 | |||||||
WBPaper00059843 | |||||||
WBPaper00064375 | |||||||
WBPaper00064552 | |||||||
WBPaper00065877 | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |