WormBase Tree Display for Gene: WBGene00015008
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WBGene00015008 | SMap | S_parent | Sequence | B0041 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | lmd-2 | Person_evidence | WBPerson8574 | |||||
Sequence_name | B0041.3 | ||||||||
Molecular_name | B0041.3 | ||||||||
B0041.3.1 | |||||||||
CE51424 | |||||||||
Other_name | CELE_B0041.3 | Accession_evidence | NDB | BX284601 | |||||
Public_name | lmd-2 | ||||||||
DB_info | Database (10) | ||||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:30:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 25 Jan 2013 14:30:54 | WBPerson2970 | Name_change | CGC_name | lmd-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | lmd | ||||||||
Allele (21) | |||||||||
RNASeq_FPKM (74) | |||||||||
Ortholog (32) | |||||||||
Paralog | WBGene00009665 | Caenorhabditis elegans | From_analysis | Panther | |||||
Structured_description | Automated_description | Enriched in body wall musculature; intestine; neurons; and retrovesicular ganglion based on microarray and RNA-seq studies. Is affected by several genes including daf-12; sir-2.1; and clk-1 based on microarray; tiling array; and RNA-seq studies. Is affected by seven chemicals including Doxycycline; Ketamine; and Quercetin based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: LysM domain superfamily; LysM domain; and LysM and putative peptidoglycan-binding domain-containing protein 1-4. Is an ortholog of human LYSMD1 (LysM domain containing 1) and LYSMD2 (LysM domain containing 2). | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | B0041.3 | |||||||
Corresponding_CDS_history | B0041.3:wp252 | ||||||||
Corresponding_transcript | B0041.3.1 | ||||||||
Other_sequence | MI01003 | ||||||||
CV199347.1 | |||||||||
Associated_feature | WBsf643226 | ||||||||
WBsf983455 | |||||||||
WBsf217555 | |||||||||
Experimental_info | RNAi_result | WBRNAi00023624 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00002828 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023012 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00027965 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00038687 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023913 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00090772 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00023113 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1024960 | ||||||||
Expr1036415 | |||||||||
Expr1142894 | |||||||||
Expr2013231 | |||||||||
Expr2031462 | |||||||||
Drives_construct | WBCnstr00029163 | ||||||||
Construct_product | WBCnstr00029163 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (94) | |||||||||
Interaction | WBInteraction000194521 | ||||||||
WBInteraction000237241 | |||||||||
WBInteraction000248467 | |||||||||
WBInteraction000249449 | |||||||||
WBInteraction000358296 | |||||||||
WBInteraction000394851 | |||||||||
WBInteraction000417213 | |||||||||
WBInteraction000449092 | |||||||||
WBInteraction000474744 | |||||||||
Map_info | Map | I | Position | -1.03468 | |||||
Positive | Positive_clone | B0041 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00031295 | ||||||||
WBPaper00038491 | |||||||||
WBPaper00055090 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |