WormBase Tree Display for Gene: WBGene00014965

WBGene00014965 SMap: S_parent: Sequence: Y106G6D
  Identity: Version: 2
    Name: Sequence_name: Y106G6D.5
      Molecular_name: Y106G6D.5a
        Y106G6D.5a.1
        CE50264
        Y106G6D.5b
        CE50220
        Y106G6D.5b.1
        Y106G6D.5c
        Y106G6D.5d
      Other_name: CELE_Y106G6D.5 Accession_evidence: NDB BX284601
      Public_name: Y106G6D.5
    DB_info: Database: WormQTL gene WBGene00014965
        NDB locus_tag CELE_Y106G6D.5
        Panther gene CAEEL|WormBase=Y106G6D.5a|UniProtKB=A0A0K2WNK1
          family PTHR10887
        NCBI gene 13181740
        RefSeq protein NR_132563.1
            NM_001383712.1
            NM_001313461.3
            NR_132564.1
        TrEMBL UniProtAcc A0A0K2WNK1
            A0A0K2WN06
        UniProt_GCRP UniProtAcc A0A0K2WNK1
        OMIM gene 600502
        RNAcentral URSid URS000083AAAE
            URS00008454B6
    Species: Caenorhabditis elegans
    History: Version_change: 1 27 May 2004 15:23:24 WBPerson1971 Event: Imported: Initial conversion from Pseudogene class of WS125
        2 18 Sep 2014 13:15:09 WBPerson1983 Event: Changed_class: Pseudogene CDS
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele: WBVar01499739
      WBVar01496614
      WBVar00343362
      WBVar00343363
      WBVar00343364
      WBVar00343365
      WBVar00343366
      WBVar00343367
      WBVar00343368
      WBVar00343369
      WBVar00343370
      WBVar01499786
      WBVar01499054
      WBVar00267209
      WBVar00267210
      WBVar00664954
      WBVar00664955
      WBVar00664956
      WBVar00664957
      WBVar00664958
      WBVar00664959
      WBVar00664960
      WBVar00664961
      WBVar00664962
      WBVar00664963
      WBVar00664964
      WBVar00664965
      WBVar00664966
      WBVar00664967
      WBVar00664968
      WBVar00664969
      WBVar00664970
      WBVar00664971
      WBVar00664972
      WBVar00664973
      WBVar00664974
      WBVar00664975
      WBVar00664976
      WBVar00664977
      WBVar00664978
      WBVar00664979
      WBVar00664980
      WBVar00664981
      WBVar00664982
      WBVar02128324
      WBVar01498959
    RNASeq_FPKM (74)
    GO_annotation: 00000560
      00000561
      00000562
      00000563
      00000564
      00000565
      00000566
      00000567
      00120999
    Ortholog: WBGene00163862 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00193752 Caenorhabditis brenneri From_analysis: WormBase-Compara
      WBGene00033194 Caenorhabditis briggsae From_analysis: WormBase-Compara
      CBOVI.g10142 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g8028 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g21616 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP29.g21453 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g5843 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g8617 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g7844 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10348 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g17876 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g25702 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g21015 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00030.g1751 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y106G6D.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11647 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_01967.g24135 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_18851 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_002309 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g13127 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g15391 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g15399 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10183900 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g1975 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00133588 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00062424 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00240861 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00305078 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00258290 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000001500 Saccharomyces cerevisiae From_analysis: Inparanoid
            OMA
            OrthoFinder
            SonicParanoid
      FB:FBgn0034187 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
      ZFIN:ZDB-GENE-050419-258 Danio rerio From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
      HGNC:5542 Homo sapiens From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
      MGI:99954 Mus musculus From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
      RGD:68325 Rattus norvegicus From_analysis: Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
    Paralog: WBGene00001016 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00001258 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00004880 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007329 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00008099 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00010989 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00014208 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016565 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016566 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable RNA binding activity and transcription termination site sequence-specific DNA binding activity. Predicted to be involved in termination of RNA polymerase II transcription. Predicted to be located in nuclear body. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease axonal type 2S and distal spinal muscular atrophy 1. Is an ortholog of human IGHMBP2 (immunoglobulin mu DNA binding protein 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0111064 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5542)
      DOID:0110171 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:5542)
  Molecular_info: Corresponding_CDS: Y106G6D.5a
      Y106G6D.5b
    Corresponding_CDS_history: Y106G6D.5:wp101
    Corresponding_transcript: Y106G6D.5c
      Y106G6D.5d
      Y106G6D.5a.1
      Y106G6D.5b.1
    Corresponding_pseudogene_history: Y106G6D.5a:wp245
      Y106G6D.5b:wp245
    Other_sequence (29)
    Associated_feature: WBsf649549
      WBsf649550
      WBsf664838
      WBsf984918
      WBsf1010490
  Experimental_info: RNAi_result: WBRNAi00117028 Inferred_automatically: RNAi_primary
      WBRNAi00055254 Inferred_automatically: RNAi_primary
      WBRNAi00002235 Inferred_automatically: RNAi_primary
      WBRNAi00004497 Inferred_automatically: RNAi_primary
      WBRNAi00004496 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr2006987
      Expr2025209
    Microarray_results (14)
    Expression_cluster (76)
  Map_info: Positive: Positive_clone: Y106G6D Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 4.65979
  Reference: WBPaper00055090
    WBPaper00064339
  Method: Gene