WormBase Tree Display for Gene: WBGene00014576

WBGene00014576 SMap: S_parent: Sequence: Y43F11A
  Identity: Version: 2
    Name: Sequence_name: Y43F11A.6
      Molecular_name: Y43F11A.6
      Other_name: CELE_Y43F11A.6 Accession_evidence: NDB BX284602
      Public_name: Y43F11A.6
    DB_info: Database: AceView gene 2M422
        WormQTL gene WBGene00014576
        NDB locus_tag CELE_Y43F11A.6
        NCBI gene 174854
    Species: Caenorhabditis elegans
    History: Version_change: 1 27 May 2004 15:06:47 WBPerson1971 Event: Imported: Initial conversion from Transcript class of WS125
        2 30 Oct 2006 11:50:16 WBPerson1983 Event: Changed_class: Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Allele (48)
    RNASeq_FPKM (74)
    Contained_in_operon: CEOP2590
    Paralog: WBGene00012112 Caenorhabditis elegans From_analysis: modENCODE_Pseudogenes
    Structured_description: Automated_description: Enriched in germ line and head mesodermal cell based on RNA-seq studies. Is affected by several genes including eat-2; sir-2.1; and clk-1 based on RNA-seq and microarray studies. Is affected by seven chemicals including rotenone; manganese chloride; and allantoin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: Y43F11A.6:wp117
    Corresponding_transcript_history: Y43F11A.6:wp167
    Corresponding_pseudogene: Y43F11A.6
  Experimental_info: Microarray_results: SMD_Y43F11A.6
      184367_s_at
      GPL3518_CE21918
      GPL9450_Y43F11A.6
      cea2.p.49813
    Expression_cluster: WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_downregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00045571:germline-ablation_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00048611:MnCl2_downregulated
      WBPaper00049018:swsn-2.2(RNAi)_upregulated
      WBPaper00049498:npr-1(ur89)_regulated_8
      WBPaper00050015:ifg-1(RNAi)_upregulated
      WBPaper00050080:rbr-2(tm3141)_downregulated
      WBPaper00050193:lsm-1(tm3585)_upregulated_L3
      WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050743:elli-1(sam-3)_upregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day1-adult
      WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
      WBPaper00050859:downregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00051039:germline_enriched
      WBPaper00051558:aging_regulated
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053308:SMG-2_associated_NMD(-)_upregulated_ClassI
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055354:Rapamycin-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056290:hsp-6(mg585)_downregulated
      WBPaper00056443:sek-1(km4)_downregulated
      WBPaper00056826:hmc_biased
      WBPaper00057068:numr-1(RNAi)_upregulated
      WBPaper00057068:numr-1(RNAi)_upregulated_Cadmium
      WBPaper00057288:Cold_upregulated_transcript
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059987:Wounding_downregulated
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_downregulated_neural
      WBPaper00060871:M.humicola-infection_48h_regulated
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061527:T22D1.5-inx-14
      WBPaper00062325:muscle_depleted_noncoding-RNA
      WBPaper00062440:crh-1(n3315)_upregulated
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064158:xpo-1(RNAi)_downregulated
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065984:pals-17(syb3980)_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00029437:dcr-1_downregulated
      WBPaper00034757:down_by_oxidative_stress
      WBPaper00035905:FBF-1_Associated
      WBPaper00036286:Pattern_H
      WBPaper00041002:HF_3d_0.2mM_Down
      WBPaper00041002:HF_3d_2.0mM_Down
      WBPaper00041002:HF_11d_2.0mM_Up
      WBPaper00041002:HQ_3d_0.2mM_Up
      WBPaper00041002:HQ_3d_2.0mM_Down
      WBPaper00045263:nuo-6(qm200)_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      [cgc6390]:intrinsic
  Map_info: Positive: Positive_clone: Y43F11A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II 6.71593
  Method: Gene