WormBase Tree Display for Gene: WBGene00014569
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| WBGene00014569 | SMap | S_parent | Sequence | Y39G8C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | bkip-1 | Person_evidence | WBPerson3293 | |||||
| Sequence_name | Y39G8C.3 | ||||||||
| Molecular_name | Y39G8C.3a | ||||||||
| Y39G8C.3a.1 | |||||||||
| CE44622 | |||||||||
| Y39G8C.3b | |||||||||
| CE44559 | |||||||||
| Y39G8C.3b.1 | |||||||||
| Y39G8C.3c | |||||||||
| Other_name | Y39G8C.d | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y39G8C.3 | Accession_evidence | NDB | BX284602 | ||||||
| Public_name | bkip-1 | ||||||||
| DB_info | Database | AceView | gene | 2O393 | |||||
| WormFlux | gene | WBGene00014569 | |||||||
| NDB | locus_tag | CELE_Y39G8C.3 | |||||||
| NCBI | gene | 175062 | |||||||
| RefSeq | protein | NM_001267486.3 | |||||||
| NM_001267485.1 | |||||||||
| NR_051890.1 | |||||||||
| TrEMBL | UniProtAcc | D3NQA5 | |||||||
| G5EFW1 | |||||||||
| UniProt_GCRP | UniProtAcc | D3NQA5 | |||||||
| RNAcentral | URSid | URS0000155C10 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 27 May 2004 15:06:47 | WBPerson1971 | Event | Imported | Initial conversion from Transcript class of WS125 | ||
| 2 | 07 Jan 2011 10:01:10 | WBPerson2970 | Name_change | CGC_name | bkip-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | bkip | ||||||||
| Allele (43) | |||||||||
| Strain | WBStrain00040907 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00007374 | ||||||||
| 00007375 | |||||||||
| 00007376 | |||||||||
| 00007377 | |||||||||
| Ortholog | chrII_pilon.g6480 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| Structured_description | Concise_description | bkip-1 encodes a novel transmembrane protein conserved amongst nematodes; genetic studies indicate that BKIP-1 functions to regulate the activity of the SLO-1 Ca2+- and voltage-gated potassium channel; BKIP-1 and SLO-1 interact in vitro; a BKIP-1::GFP fusion protein is expressed in most neurons, body wall muscles cells, and the head mesodermal cell, and localizes to the nerve ring and the dense body. | Paper_evidence | WBPaper00037877 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 27 Jan 2011 00:00:00 | ||||||||
| Automated_description | Enables transmembrane transporter binding activity. Located in neuron projection and striated muscle dense body. Expressed in body wall musculature; head mesodermal cell; muscle cell; neurons; and somatic nervous system. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y39G8C.3a | |||||||
| Y39G8C.3b | |||||||||
| Corresponding_transcript | Y39G8C.3c | ||||||||
| Y39G8C.3a.1 | |||||||||
| Y39G8C.3b.1 | |||||||||
| Corresponding_transcript_history | Y39G8C.3a:wp175 | ||||||||
| Y39G8C.3b:wp175 | |||||||||
| Corresponding_pseudogene_history | Y39G8C.3a:wp122 | ||||||||
| Y39G8C.3a:wp212 | |||||||||
| Y39G8C.3b:wp122 | |||||||||
| Y39G8C.3b:wp212 | |||||||||
| Associated_feature | WBsf658389 | ||||||||
| WBsf1013776 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00020427 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Expr9177 | ||||||||
| Expr1159776 | |||||||||
| Expr2009627 | |||||||||
| Expr2027865 | |||||||||
| Drives_construct | WBCnstr00008016 | ||||||||
| WBCnstr00008018 | |||||||||
| WBCnstr00013771 | |||||||||
| WBCnstr00019905 | |||||||||
| Construct_product | WBCnstr00008008 | ||||||||
| WBCnstr00008009 | |||||||||
| WBCnstr00008010 | |||||||||
| WBCnstr00008011 | |||||||||
| WBCnstr00008012 | |||||||||
| WBCnstr00008013 | |||||||||
| WBCnstr00008014 | |||||||||
| WBCnstr00008015 | |||||||||
| WBCnstr00008018 | |||||||||
| WBCnstr00019905 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (59) | |||||||||
| Interaction | WBInteraction000504715 | ||||||||
| WBInteraction000540790 | |||||||||
| WBInteraction000556324 | |||||||||
| WBInteraction000561588 | |||||||||
| Map_info | Map | II | Position | 22.4196 | Error | 0.004206 | |||
| Positive | Positive_clone | Y39G8C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00033510 | ||||||||
| WBPaper00037877 | |||||||||
| WBPaper00049114 | |||||||||
| WBPaper00052812 | |||||||||
| WBPaper00053504 | |||||||||
| WBPaper00054909 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
