WormBase Tree Display for Gene: WBGene00013920
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| WBGene00013920 | SMap | S_parent | Sequence | ZC506 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | pssy-1 | Person_evidence | WBPerson1105 | |||||
| Sequence_name | ZC506.3 | ||||||||
| Molecular_name | ZC506.3 | ||||||||
| ZC506.3.1 | |||||||||
| CE01681 | |||||||||
| ZC506.3.2 | |||||||||
| Other_name | CELE_ZC506.3 | Accession_evidence | NDB | BX284606 | |||||
| Public_name | pssy-1 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 02 Mar 2006 11:42:04 | WBPerson2970 | Name_change | CGC_name | pssy-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | pssy | ||||||||
| Allele (53) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (15) | |||||||||
| Contained_in_operon | CEOPX107 | ||||||||
| Ortholog (35) | |||||||||
| Paralog | WBGene00012095 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| WBGene00012897 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Concise_description | pssy-1 encodes a phosphatidylserine (PS) synthase; by homology, PSSY-1 is predicted to function in the biosynthesis of phosphatidylserine; loss of pssy-1 function suppresses endocytic recyling defects in animals containing a mutation in tat-1, a P4-ATPase that functions to transport phosphatidylserine and in animals overexpressing NUM-1A, an isoform of the C. elegans Numb ortholog. | Paper_evidence | WBPaper00040189 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 14 Oct 2011 00:00:00 | ||||||||
| Automated_description | Predicted to enable L-serine-phosphatidylethanolamine phosphatidyltransferase activity. Predicted to be involved in phosphatidylserine biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Human ortholog(s) of this gene implicated in Lenz-Majewski hyperostotic dwarfism. Is an ortholog of human PTDSS1 (phosphatidylserine synthase 1). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111507 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:9587) | ||||
| Molecular_info | Corresponding_CDS | ZC506.3 | |||||||
| Corresponding_transcript | ZC506.3.1 | ||||||||
| ZC506.3.2 | |||||||||
| Other_sequence (26) | |||||||||
| Associated_feature | WBsf648437 | ||||||||
| WBsf663213 | |||||||||
| WBsf1006580 | |||||||||
| WBsf236223 | |||||||||
| WBsf236224 | |||||||||
| WBsf236225 | |||||||||
| WBsf236226 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00058984 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00087512 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001747 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00038086 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Chronogram2083 | ||||||||
| Expr7173 | |||||||||
| Expr1024311 | |||||||||
| Expr1036228 | |||||||||
| Expr1162417 | |||||||||
| Expr2015137 | |||||||||
| Expr2033375 | |||||||||
| Drives_construct | WBCnstr00003699 | ||||||||
| WBCnstr00029444 | |||||||||
| Construct_product | WBCnstr00029444 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (107) | |||||||||
| Interaction | WBInteraction000286504 | ||||||||
| WBInteraction000287546 | |||||||||
| WBInteraction000308997 | |||||||||
| WBInteraction000317134 | |||||||||
| WBInteraction000378737 | |||||||||
| WBInteraction000389768 | |||||||||
| Map_info | Map | X | Position | 1.73168 | |||||
| Positive | Positive_clone | ZC506 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00040189 | |||||||||
| WBPaper00042257 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00060347 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
