WormBase Tree Display for Gene: WBGene00013739
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| WBGene00013739 | SMap | S_parent | Sequence | Y111B2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | spin-4 | Paper_evidence | WBPaper00042308 | |||||
| Sequence_name | Y111B2A.19 | ||||||||
| Molecular_name | Y111B2A.19a | ||||||||
| Y111B2A.19a.1 | |||||||||
| CE52802 | |||||||||
| Y111B2A.19b | |||||||||
| CE52767 | |||||||||
| Y111B2A.19b.1 | |||||||||
| Other_name | Y111B2G.j | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y111B2A.19 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | spin-4 | ||||||||
| DB_info | Database | AceView | gene | 3N783 | |||||
| WormQTL | gene | WBGene00013739 | |||||||
| WormFlux | gene | WBGene00013739 | |||||||
| NDB | locus_tag | CELE_Y111B2A.19 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013739|UniProtKB=A0A3B1DV80 | |||||||
| family | PTHR23505 | ||||||||
| NCBI | gene | 190952 | |||||||
| RefSeq | protein | NM_001392221.1 | |||||||
| NM_001379966.1 | |||||||||
| TrEMBL | UniProtAcc | A0A3B1DV80 | |||||||
| A0A3B1DQ22 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A3B1DV80 | |||||||
| OMIM | gene | 612584 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 04 Jun 2013 14:47:04 | WBPerson2970 | Name_change | CGC_name | spin-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spin | ||||||||
| Allele (246) | |||||||||
| Possibly_affected_by | WBVar02158935 | ||||||||
| Strain | WBStrain00032670 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00003230 | ||||||||
| 00003231 | |||||||||
| 00003232 | |||||||||
| 00120536 | |||||||||
| 00120537 | |||||||||
| Contained_in_operon | CEOP3889 | ||||||||
| Ortholog (47) | |||||||||
| Paralog | WBGene00007549 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008033 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00008598 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Predicted to enable transmembrane transporter activity. Predicted to be involved in transmembrane transport. Predicted to be located in membrane. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 115. Is an ortholog of human SPNS1 (SPNS lysolipid transporter 1, lysophospholipid); SPNS2 (SPNS lysolipid transporter 2, sphingosine-1-phosphate); and SPNS3 (SPNS lysolipid transporter 3, sphingosine-1-phosphate (putative)). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0111643 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:26992) | ||||
| Molecular_info | Corresponding_CDS | Y111B2A.19a | |||||||
| Y111B2A.19b | |||||||||
| Corresponding_CDS_history | Y111B2A.19:wp104 | ||||||||
| Y111B2A.19:wp267 | |||||||||
| Corresponding_transcript | Y111B2A.19a.1 | ||||||||
| Y111B2A.19b.1 | |||||||||
| Other_sequence (27) | |||||||||
| Associated_feature (14) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00019884 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055352 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036573 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1024267 | ||||||||
| Expr1036157 | |||||||||
| Expr1158881 | |||||||||
| Expr2016059 | |||||||||
| Expr2034295 | |||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (87) | |||||||||
| Interaction | WBInteraction000033877 | ||||||||
| WBInteraction000168245 | |||||||||
| WBInteraction000198935 | |||||||||
| WBInteraction000211519 | |||||||||
| WBInteraction000295208 | |||||||||
| Map_info | Map | III | Position | 18.198 | |||||
| Positive | Positive_clone | Y111B2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00064639 | |||||||||
| WBPaper00065123 | |||||||||
| WBPaper00066330 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
