WormBase Tree Display for Gene: WBGene00013739

WBGene00013739 SMap: S_parent: Sequence: Y111B2A
  Identity: Version: 2
    Name: CGC_name: spin-4 Paper_evidence: WBPaper00042308
      Sequence_name: Y111B2A.19
      Molecular_name: Y111B2A.19a
        Y111B2A.19a.1
        CE52802
        Y111B2A.19b
        CE52767
        Y111B2A.19b.1
      Other_name: Y111B2G.j Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y111B2A.19 Accession_evidence: NDB BX284603
      Public_name: spin-4
    DB_info: Database: AceView gene 3N783
        WormQTL gene WBGene00013739
        WormFlux gene WBGene00013739
        NDB locus_tag CELE_Y111B2A.19
        Panther gene CAEEL|WormBase=WBGene00013739|UniProtKB=A0A3B1DV80
          family PTHR23505
        NCBI gene 190952
        RefSeq protein NM_001392221.1
            NM_001379966.1
        TrEMBL UniProtAcc A0A3B1DV80
            A0A3B1DQ22
        UniProt_GCRP UniProtAcc A0A3B1DV80
        OMIM gene 612584
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 04 Jun 2013 14:47:04 WBPerson2970 Name_change: CGC_name: spin-4
    Status: Live
  Gene_info (11)
  Disease_info: Potential_model: DOID:0111643 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:26992)
  Molecular_info: Corresponding_CDS: Y111B2A.19a
      Y111B2A.19b
    Corresponding_CDS_history: Y111B2A.19:wp104
      Y111B2A.19:wp267
    Corresponding_transcript: Y111B2A.19a.1
      Y111B2A.19b.1
    Other_sequence (27)
    Associated_feature (14)
  Experimental_info: RNAi_result: WBRNAi00019884 Inferred_automatically: RNAi_primary
      WBRNAi00055352 Inferred_automatically: RNAi_primary
      WBRNAi00036573 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1024267
      Expr1036157
      Expr1158881
      Expr2016059
      Expr2034295
    Microarray_results (17)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_downregulated
      WBPaper00044037:eat-2_downregulated
      WBPaper00044426:rotenone_24h_downregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Gender_Neutral
      WBPaper00045729:gld-2(RNAi)_downregulated
      WBPaper00045774:clk-1_downregulated
      WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00046509:htz-1(ok3099)_downregulated
      WBPaper00048988:daf-16(mu86)_upregulated_neuron
      WBPaper00048988:neuron_expressed
      WBPaper00049498:npr-1(ur89)_regulated_3
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050522:mafr-1(tm6082)_downregulated
      WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00051311:VGLN-1-interacting
      WBPaper00053184:sma-2(rax5)_downregulated
      WBPaper00053184:sma-4(rax3)_downregulated
      WBPaper00053289:DREAM-target
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00053810:nuo-6(qm200)_downregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
      WBPaper00055386:daf-2(e1370)_downregulated
      WBPaper00055482:pmt-2(RNAi)_downregulated
      WBPaper00055971:nhl-2(ok818)_20C_upregulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
      WBPaper00056826:SGP_biased
      WBPaper00058598:sin-3(tm1276)_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00060100:SiNP_upregulated_mRNA
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_non-pathogen_regulated_N2
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:sin-3(tm1276)_downregulated
      WBPaper00061203:spr-1(ok2144)_downregulated
      WBPaper00061340:Parent_of_hyp1V_and_ant_arc_V
      WBPaper00061340:PVP
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061527:srj-42-srw-113
      WBPaper00062159:hda-2(ok1479)_downregulated
      WBPaper00062325:muscle_enriched_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064315:mrg-1(qa6200)_downregulated_PGCs
      WBPaper00065096:Day10_vs_Day1_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065149:lin-52(n771)_upregulated
      WBPaper00065835:Day11_vs_Day1_upregulated
      WBPaper00065975:P-body_vs_oocyte_enriched
      WBPaper00065975:P-body_vs_WholeAnimal_enriched
      WBPaper00065993:glp-1(e2141)_downregulated
      WBPaper00066110:Doxorubicin_downregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_downregulated
      WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
      WBPaper00030985:Enterococcus_faecalis_downregulated
      WBPaper00037113:Chlorpyrifos_Diazinon_16C_regulated
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_aging
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00041174:genotypic
      WBPaper00041174:genotypic_prime
      WBPaper00041939:control_vs_UVC-exposed_3h
      WBPaper00045807:microcystin-LR_downregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction: WBInteraction000033877
      WBInteraction000168245
      WBInteraction000198935
      WBInteraction000211519
      WBInteraction000295208
  Map_info: Map: III Position: 18.198
    Positive: Positive_clone: Y111B2A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
    WBPaper00064639
    WBPaper00065123
    WBPaper00066330
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene