WormBase Tree Display for Gene: WBGene00013738
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| WBGene00013738 | SMap | S_parent | Sequence | Y111B2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | elpc-2 | Person_evidence | WBPerson4055 | |||||
| Sequence_name | Y111B2A.17 | ||||||||
| Molecular_name | Y111B2A.17 | ||||||||
| Y111B2A.17.1 | |||||||||
| CE34502 | |||||||||
| Other_name | Y111B2G.h | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y111B2A.17 | Accession_evidence | NDB | BX284603 | ||||||
| Public_name | elpc-2 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 08 Oct 2007 16:51:06 | WBPerson2970 | Name_change | CGC_name | elpc-4 | ||||
| 3 | 20 Dec 2007 11:47:54 | WBPerson2970 | Name_change | CGC_name | elpc-4 corrected to elpc-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | elpc | ||||||||
| Allele (394) | |||||||||
| Strain | WBStrain00048694 | ||||||||
| WBStrain00051421 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00096506 | ||||||||
| 00096507 | |||||||||
| 00096508 | |||||||||
| 00096509 | |||||||||
| 00120534 | |||||||||
| 00120535 | |||||||||
| Ortholog (37) | |||||||||
| Structured_description | Automated_description | Predicted to be involved in tRNA wobble uridine modification. Predicted to be located in cytoplasm and nucleus. Predicted to be part of elongator holoenzyme complex. Expressed in several structures, including body wall musculature; coelomocyte; excretory cell; intestine; and pharynx. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 58. Is an ortholog of human ELP2 (elongator acetyltransferase complex subunit 2). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model | DOID:0081220 | Homo sapiens | Inferred_automatically | Inferred by orthology to human genes with DO annotation (HGNC:18248) | ||||
| Molecular_info | Corresponding_CDS | Y111B2A.17 | |||||||
| Corresponding_CDS_history | Y111B2A.17:wp85 | ||||||||
| Y111B2A.17:wp101 | |||||||||
| Corresponding_transcript | Y111B2A.17.1 | ||||||||
| Other_sequence (368) | |||||||||
| Associated_feature | WBsf994700 | ||||||||
| WBsf994701 | |||||||||
| WBsf994702 | |||||||||
| WBsf994703 | |||||||||
| WBsf994704 | |||||||||
| WBsf1016235 | |||||||||
| WBsf1016236 | |||||||||
| WBsf225922 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055348 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00095076 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036571 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00055349 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr14809 | ||||||||
| Expr1017408 | |||||||||
| Expr1036156 | |||||||||
| Expr1158879 | |||||||||
| Expr2011289 | |||||||||
| Expr2029525 | |||||||||
| Drives_construct | WBCnstr00029536 | ||||||||
| WBCnstr00041429 | |||||||||
| Construct_product | WBCnstr00029536 | ||||||||
| Microarray_results (22) | |||||||||
| Expression_cluster (94) | |||||||||
| Interaction (147) | |||||||||
| Map_info | Map | III | Position | 18.1584 | Error | 0.014498 | |||
| Positive | Positive_clone | Y111B2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00036232 | ||||||||
| WBPaper00038491 | |||||||||
| WBPaper00055090 | |||||||||
| WBPaper00056918 | |||||||||
| WBPaper00060622 | |||||||||
| WBPaper00060694 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
