WormBase Tree Display for Gene: WBGene00013738

WBGene00013738 SMap: S_parent: Sequence: Y111B2A
  Identity: Version: 3
    Name: CGC_name: elpc-2 Person_evidence: WBPerson4055
      Sequence_name: Y111B2A.17
      Molecular_name: Y111B2A.17
        Y111B2A.17.1
        CE34502
      Other_name: Y111B2G.h Curator_confirmed: WBPerson1983
          Remark: Old cosmid naming mapped via unique overlapping PCR_product on CDSs
        CELE_Y111B2A.17 Accession_evidence: NDB BX284603
      Public_name: elpc-2
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 08 Oct 2007 16:51:06 WBPerson2970 Name_change: CGC_name: elpc-4
        3 20 Dec 2007 11:47:54 WBPerson2970 Name_change: CGC_name: elpc-4 corrected to elpc-2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: elpc
    Allele (394)
    Strain: WBStrain00048694
      WBStrain00051421
    RNASeq_FPKM (74)
    GO_annotation: 00096506
      00096507
      00096508
      00096509
      00120534
      00120535
    Ortholog (37)
    Structured_description: Automated_description: Predicted to be involved in tRNA wobble uridine modification. Predicted to be located in cytoplasm and nucleus. Predicted to be part of elongator holoenzyme complex. Expressed in several structures, including body wall musculature; coelomocyte; excretory cell; intestine; and pharynx. Human ortholog(s) of this gene implicated in autosomal recessive intellectual developmental disorder 58. Is an ortholog of human ELP2 (elongator acetyltransferase complex subunit 2). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:0081220 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:18248)
  Molecular_info: Corresponding_CDS: Y111B2A.17
    Corresponding_CDS_history: Y111B2A.17:wp85
      Y111B2A.17:wp101
    Corresponding_transcript: Y111B2A.17.1
    Other_sequence: CGC00972_1
      SRC05651_1
      MA00449
      AB300634.1
      JI227754.1
      JI461388.1
      MP01093
      GP00568
      JI221053.1
      MA00039
      EX550873.1
      Tcir_isotig24638
      BMC03824
      JI212223.1
      MJ03824
      GPC01194
      JI477072.1
      HS01213
      GE639165.1
      OF01096
      ES568604.1
      ES566991.1
      HG07009
      HC08172
      MP01187
      CR11236
      JO469900.1
      MA00872
      MJ02856
      MCC04487_1
      MP01252
      BMC01746_1
      JI472651.1
      JI214207.1
      MJ03070
      MH04924
      JI170489.1
      FC539982.1
      AS08628
      OFC01419_1
      MIC06214_1
      Dviv_isotig08381
      EL888847.1
      PTC03883_1
      AB300638.1
      JI236699.1
      MJ03201
      JI243960.1
      MP00910
      JI469760.1
      MI07410
      TCC00869_1
      MH04323
      DI01789
      CV201132.1
      JI461650.1
      MC03960
      ACC21746_1
      MA01122
      JI167032.1
      MH05904
      Acan_isotig13294
      SR04611
      GPC01217_1
      GO240458.1
      Dviv_isotig18842
      JI222621.1
      JI219508.1
      GO251718.1
      MA02250
      BM032661.1
      JI239663.1
      HGC07774_1
      MI03103
      TCC02400_1
      TSC07158_1
      JK315741.1
      MJ04201
      DI02043
      JI227628.1
      MH05354
      MHC01073_1
      EX501841.1
      BMC06862_1
      JI181152.1
      MP01498
      MJ02930
      MIC09398_1
      JI463842.1
      JI465425.1
      GT571025.1
      JI239813.1
      MJ00365
      SRC01685_1
      JI166996.1
      EX559415.1
      JI481575.1
      Oden_isotig17586
      MA03262
      MH05988
      Hbac_isotig06664
      JI470438.1
      NB08628
      CBC05002_1
      JI463671.1
      TSC00124_1
      EU263318.1
      OOC00400_2
      BMC02315_1
      Dviv_isotig08380
      JI169995.1
      JI483311.1
      MA00504
      MJ04312
      ACC21968_1
      MJ02765
      MPC00617_1
      MCC02364_1
      JI213435.1
      JI252716.1
      EL890183.1
      AB300648.1
      MP01328
      JI252278.1
      GO252218.1
      JI225840.1
      MIC02633_1
      AS10626
      MJ02721
      FG585655.1
      DI01639
      GO252407.1
      JI464922.1
      PT00287
      MJ03269
      HGC10991_1
      HGC10967_1
      MI08727
      JI174809.1
      CJC03795_1
      GO250515.1
      JI465904.1
      JI181465.1
      XI02159
      MH03730
      JI254112.1
      MJ00700
      ACC40225_1
      MCC01450_1
      JI466402.1
      MA00452
      GT571499.1
      ASC02324_1
      CR02706
      MA03211
      JI470129.1
      CR06103
      ASC00016_1
      MJ03920
      MJ02411
      MP01548
      JI247789.1
      DI00827
      JI177082.1
      GPC01280
      MJ03360
      ACC30999_1
      MJC03732_1
      MCC00919_1
      MC05321
      GW915761.1
      JI464662.1
      MJ02995
      EW743859.1
      PT02221
      JI181289.1
      Dviv_isotig31042
      JI478775.1
      Dviv_contig18539
      Name_isotig04578
      EL784322.1
      JI478169.1
      JI210930.1
      AY134436.1
      TMC02122_1
      EL890576.1
      MJ04198
      CJC03346_1
      GW916374.1
      HC06271
      CN477859.1
      MJ03754
      MJ01251
      AYC03747_1
      JI477953.1
      EL890117.1
      MJ01807
      GP02129
      MA00269
      HG06804
      JI237777.1
      GP01723
      JI474112.1
      EY191543.1
      TX01688
      TX01027
      MC03677
      JI255944.1
      NB07017
      TSC06389_1
      MP00826
      MJ03268
      OOC00406_1
      HC07092
      AB300652.1
      MH02344
      SR02489
      PT03150
      CN477891.1
      MA00052
      PVC03107_1
      BE225369.1
      Dviv_isotig18843
      GO250455.1
      MH04891
      EL890705.1
      MA03133
      JI166782.1
      MA00144
      GP03380
      JI484109.1
      JI168017.1
      MJ02592
      EL784306.1
      GO251086.1
      JI175445.1
      MIC05293_1
      JO474978.1
      GP00467
      CRC00278_1
      ASC27924_1
      JI460106.1
      PT04557
      MC04387
      PPC16732_1
      GPC01306_1
      Acan_isotig08302
      MAC01026_1
      GW915839.1
      MAC00636_1
      HGC07454_1
      EU331362.1
      MJ04084
      Tcir_isotig28740
      MIC09268_1
      HC06422
      GP01632
      SSC00378_1
      BXC05749_1
      JI459278.1
      CRC02460_1
      CA840860.1
      MJ02079
      PT03307
      BMC16406_1
      EL890200.1
      BM01157
      CN477441.1
      JI466895.1
      FC816806.1
      ES563427.1
      MJ03596
      EX535574.1
      FC539404.1
      MJ02779
      HG04175
      HCC03943_1
      JI219973.1
      JI466659.1
      JI469620.1
      JI253001.1
      MJ02061
      JI256271.1
      JI464544.1
      MP00430
      ES562348.1
      CA840821.1
      MP00914
      BE225510.1
      MH04947
      JI165305.1
      JK315221.1
      DIC01205_1
      CA953675.1
      JI219387.1
      JI252882.1
      ACC18719_1
      BMC18093_1
      BXC03408_1
      TX01148
      HGC07460_1
      JI177624.1
      AB300650.1
      JI462809.1
      JI482802.1
      GPC00634_1
      CD455432.1
      JI228799.1
      BI781486.1
      OF00450
      SRC01744_1
      BM567590.1
      MJ03638
      GO251421.1
      JI167896.1
      MIC03038_1
      GPC01233_1
      BM01468
      SS01493
      SR04347
      JI461854.1
      CV200985.1
      MJ03077
      JI468219.1
      GO251759.1
      MC03484
      JI480684.1
      MH05285
      MH06123
      MP01293
      FG582069.1
      PSC00232_1
      MP00574
      GO240528.1
      MJC03274_1
      TX00995
      JI252741.1
      BMC18301_1
      AE04747
      CJC06922_1
      AB300639.1
      FF145718.1
      MJ00395
      GO251870.1
      JI176046.1
      MP00965
      JI234299.1
      ES565941.1
      MH04641
      AE03529
      EL890030.1
      GO250987.1
      JI181381.1
      MA01544
      JI170314.1
      CN477919.1
      DI01511
      GW407829.1
      MJ02555
      GP01182
      ASC05777_1
      JI482153.1
      EL784644.1
      SS01440
      MA03205
      ES561262.1
      JI171212.1
      GO253028.1
    Associated_feature: WBsf994700
      WBsf994701
      WBsf994702
      WBsf994703
      WBsf994704
      WBsf1016235
      WBsf1016236
      WBsf225922
  Experimental_info: RNAi_result: WBRNAi00055348 Inferred_automatically: RNAi_primary
      WBRNAi00095076 Inferred_automatically: RNAi_primary
      WBRNAi00036571 Inferred_automatically: RNAi_primary
      WBRNAi00055349 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr14809
      Expr1017408
      Expr1036156
      Expr1158879
      Expr2011289
      Expr2029525
    Drives_construct: WBCnstr00029536
      WBCnstr00041429
    Construct_product: WBCnstr00029536
    Microarray_results (22)
    Expression_cluster (94)
    Interaction (147)
  Map_info: Map: III Position: 18.1584 Error: 0.014498
    Positive: Positive_clone: Y111B2A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00036232
    WBPaper00038491
    WBPaper00055090
    WBPaper00056918
    WBPaper00060622
    WBPaper00060694
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene