WormBase Tree Display for Gene: WBGene00013642
expand all nodes | collapse all nodes | view schema
| WBGene00013642 | SMap | S_parent | Sequence | Y105C5A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | |||||||
| Name | CGC_name | daf-38 | Paper_evidence | WBPaper00041157 | |||||
| Sequence_name | Y105C5A.23 | ||||||||
| Molecular_name | Y105C5A.23 | ||||||||
| Y105C5A.23.1 | |||||||||
| CE24056 | |||||||||
| Other_name | gnrr-8 | ||||||||
| CELE_Y105C5A.23 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | daf-38 | ||||||||
| DB_info | Database | AceView | gene | 4Q589 | |||||
| WormQTL | gene | WBGene00013642 | |||||||
| WormFlux | gene | WBGene00013642 | |||||||
| NDB | locus_tag | CELE_Y105C5A.23 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013642|UniProtKB=Q9U320 | |||||||
| family | PTHR24230 | ||||||||
| NCBI | gene | 178443 | |||||||
| RefSeq | protein | NM_070486.4 | |||||||
| SwissProt | UniProtAcc | Q9U320 | |||||||
| UniProt_GCRP | UniProtAcc | Q9U320 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 17 Aug 2007 13:50:11 | WBPerson2970 | Name_change | CGC_name | gnrr-8 | ||||
| 3 | 29 Jun 2012 16:53:07 | WBPerson2970 | Name_change | CGC_name | daf-38 | ||||
| Other_name | gnrr-8 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | daf | ||||||||
| Allele (142) | |||||||||
| Strain | WBStrain00032773 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (30) | |||||||||
| Paralog (14) | |||||||||
| Structured_description | Concise_description | daf-38 encodes a G-protein coupled receptor (GPCR) with homology to human gonadotropin-releasing hormone receptor; daf-38 participates in perception of ascr#2 as well as other ascarosides, which are the major small-molecule components of the dauer pheromone and control developmental diapause (dauer), olfactory learning, social behavior and lifespan; daf-38 forms a heterodimer with daf-37 (a GPCR that belongs to the serpentine receptor class w (Srw) family of chemoreceptors) that also participates in perception of the ascaroside, ascr#2), most likely to form a functional receptor complex; daf-38 and daf-37 are expressed in chemosensory neurons. | Paper_evidence | WBPaper00041157 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| Date_last_updated | 16 Sep 2013 00:00:00 | ||||||||
| Automated_description | Enables protein heterodimerization activity. Involved in G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Expressed in chemosensory neurons and head neurons. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y105C5A.23 | |||||||
| Corresponding_transcript | Y105C5A.23.1 | ||||||||
| Other_sequence (13) | |||||||||
| Associated_feature (11) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00072305 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00055180 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00019846 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00074913 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00036463 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr10038 | ||||||||
| Expr1014171 | |||||||||
| Expr1036095 | |||||||||
| Expr1158713 | |||||||||
| Expr2010777 | |||||||||
| Expr2029014 | |||||||||
| Drives_construct | WBCnstr00014849 | ||||||||
| WBCnstr00037844 | |||||||||
| Construct_product | WBCnstr00037844 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (119) | |||||||||
| Interaction | WBInteraction000561383 | ||||||||
| WBInteraction000561385 | |||||||||
| Map_info | Map | IV | Position | 14.3898 | Error | 0.001629 | |||
| Positive | Positive_clone | Y105C5A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00041157 | ||||||||
| WBPaper00059668 | |||||||||
| WBPaper00065100 | |||||||||
| WBPaper00065565 | |||||||||
| WBPaper00065946 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
