WormBase Tree Display for Gene: WBGene00013598
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| WBGene00013598 | SMap | S_parent | Sequence | Y87G2A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vps-28 | Person_evidence | WBPerson3188 | |||||
| WBPerson1816 | |||||||||
| Sequence_name | Y87G2A.10 | ||||||||
| Molecular_name | Y87G2A.10a | ||||||||
| Y87G2A.10a.1 | |||||||||
| CE23139 | |||||||||
| Y87G2A.10b | |||||||||
| Other_name | CELE_Y87G2A.10 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | vps-28 | ||||||||
| DB_info | Database | WormQTL | gene | WBGene00013598 | |||||
| WormFlux | gene | WBGene00013598 | |||||||
| NDB | locus_tag | CELE_Y87G2A.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013598|UniProtKB=Q9NA26 | |||||||
| family | PTHR12937 | ||||||||
| NCBI | gene | 173229 | |||||||
| RefSeq | protein | NM_060981.6 | |||||||
| NR_023947.1 | |||||||||
| SwissProt | UniProtAcc | Q9NA26 | |||||||
| TREEFAM | TREEFAM_ID | TF313364 | |||||||
| UniProt_GCRP | UniProtAcc | Q9NA26 | |||||||
| RNAcentral | URSid | URS00004A7C85 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Sep 2007 09:52:01 | WBPerson2970 | Name_change | CGC_name | vps-28 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vps | ||||||||
| Allele (45) | |||||||||
| Strain | WBStrain00036866 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00095730 | ||||||||
| 00095731 | |||||||||
| 00095732 | |||||||||
| 00095733 | |||||||||
| 00095734 | |||||||||
| 00095735 | |||||||||
| 00095736 | |||||||||
| 00095737 | |||||||||
| 00120418 | |||||||||
| 00120419 | |||||||||
| Contained_in_operon | CEOP1712 | ||||||||
| CEOP1708 | |||||||||
| Ortholog (40) | |||||||||
| Structured_description | Concise_description | vps-28 encodes the C. elegans ortholog of S. cerevisiae vacuolar protein sorting protein Vps28p and human VPS28; VPS-28 is a component of the C. elegans ESCRT-1 (Endosomal Sorting Complex Required for Transport, other members include VPS-37, MVB-12, and TSG-101) that is required for cell surface receptor degradation via the multivesicular body sorting pathway and hence, downregulation of receptor activity. | Paper_evidence | WBPaper00006395 | |||||
| WBPaper00024497 | |||||||||
| WBPaper00026641 | |||||||||
| WBPaper00031035 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 09 Jul 2010 00:00:00 | ||||||||
| Automated_description | Involved in receptor catabolic process. Part of ESCRT I complex. Is an ortholog of human VPS28 (VPS28 subunit of ESCRT-I). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y87G2A.10a | |||||||
| Corresponding_transcript | Y87G2A.10b | ||||||||
| Y87G2A.10a.1 | |||||||||
| Other_sequence (39) | |||||||||
| Associated_feature | WBsf665070 | ||||||||
| WBsf985901 | |||||||||
| WBsf220521 | |||||||||
| Experimental_info | RNAi_result (27) | ||||||||
| Expr_pattern | Expr1026125 | ||||||||
| Expr1036083 | |||||||||
| Expr1162015 | |||||||||
| Expr2018018 | |||||||||
| Expr2036155 | |||||||||
| Microarray_results (25) | |||||||||
| Expression_cluster (81) | |||||||||
| Interaction (31) | |||||||||
| Map_info | Map | I | Position | 21.5544 | Error | 0.01141 | |||
| Positive | Positive_clone | Y87G2A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (13) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
