WormBase Tree Display for Gene: WBGene00013494
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| WBGene00013494 | SMap | S_parent | Sequence | Y70C5C | ||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 3 | ||||||||
| Name | CGC_name | irld-58 | Person_evidence | WBPerson260 | ||||||
| Sequence_name | Y70C5C.3 | |||||||||
| Molecular_name | Y70C5C.3 | |||||||||
| Other_name | CELE_Y70C5C.3 | Accession_evidence | NDB | BX284605 | ||||||
| Public_name | irld-58 | |||||||||
| DB_info | Database | AceView | gene | 5R190 | ||||||
| WormQTL | gene | WBGene00013494 | ||||||||
| WormFlux | gene | WBGene00013494 | ||||||||
| NDB | locus_tag | CELE_Y70C5C.3 | ||||||||
| NCBI | gene | 190568 | ||||||||
| Species | Caenorhabditis elegans | |||||||||
| History | Version_change | 1 | 26 May 2004 16:54:55 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | |||
| 2 | 25 May 2012 15:57:08 | WBPerson2970 | Name_change | CGC_name | irld-58 | |||||
| 3 | 13 Nov 2017 16:58:57 | WBPerson4025 | Event | Changed_class | CDS | Pseudogene | ||||
| Status | Live | |||||||||
| Gene_info | Biotype | SO:0000336 | ||||||||
| Gene_class | irld | |||||||||
| Allele (59) | ||||||||||
| RNASeq_FPKM (74) | ||||||||||
| Ortholog | WBGene00028744 | Caenorhabditis briggsae | From_analysis | OrthoMCL | ||||||
| WBGene00028747 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00028775 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00028774 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00028739 | Caenorhabditis briggsae | From_analysis | OrthoMCL | |||||||
| WBGene00193469 | Caenorhabditis brenneri | From_analysis | TreeFam | |||||||
| WBGene00065865 | Caenorhabditis remanei | From_analysis | TreeFam | |||||||
| WBGene00028752 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | |||||||
| WBGene00028753 | Caenorhabditis briggsae | From_analysis | Inparanoid_8 | |||||||
| WBGene00207242 | Caenorhabditis japonica | From_analysis | Inparanoid_8 | |||||||
| Paralog (74) | ||||||||||
| Structured_description | Automated_description | Enriched in neurons based on RNA-seq studies. Is affected by cyc-1 and sir-2.1 based on microarray studies. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | |||||||||
| WBPerson37462 | ||||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | |||||||||
| Molecular_info | Corresponding_CDS_history | Y70C5C.3:wp188 | ||||||||
| Y70C5C.3:wp262 | ||||||||||
| Corresponding_pseudogene | Y70C5C.3 | |||||||||
| Experimental_info | Expr_pattern | Expr1013248 | ||||||||
| Expr1161539 | ||||||||||
| Expr2012857 | ||||||||||
| Expr2031091 | ||||||||||
| Microarray_results (13) | ||||||||||
| Expression_cluster (13) | ||||||||||
| Interaction (151) | ||||||||||
| Map_info | Map | V | Position | 11.0685 | ||||||
| Positive | Positive_clone | Y70C5C | Inferred_automatically | From sequence, transcript, pseudogene data | ||||||
| Pseudo_map_position | ||||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||||||
| Method | Gene |
