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WormBase Tree Display for Gene: WBGene00013380

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Name Class

WBGene00013380SMapS_parentSequenceY62E10A
IdentityVersion2
NameCGC_namememi-2Paper_evidenceWBPaper00050213
Person_evidenceWBPerson1480
Sequence_nameY62E10A.14
Molecular_nameY62E10A.14
Y62E10A.14.1
CE22704
Other_nameCELE_Y62E10A.14Accession_evidenceNDBBX284604
Public_namememi-2
DB_infoDatabase (11)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
214 Oct 2016 12:10:17WBPerson2970Name_changeCGC_namememi-2
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classmemi
Allele (25)
RNASeq_FPKM (74)
Contained_in_operonCEOP4607
Ortholog (25)
ParalogWBGene00003216Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00010353Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00011290Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00015511Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in ABplpaappa; ABprpaappa; germ line; germline precursor cell; and head mesodermal cell based on tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; dpy-10; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including rotenone; manganese chloride; and Alovudine based on RNA-seq and microarray studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY62E10A.14
Corresponding_transcriptY62E10A.14.1
Other_sequenceCR01024
CBC03521_1
CBC08429_1
Associated_featureWBsf998401
WBsf231126
Experimental_infoRNAi_resultWBRNAi00086575Inferred_automaticallyRNAi_primary
WBRNAi00057846Inferred_automaticallyRNAi_primary
WBRNAi00086576Inferred_automaticallyRNAi_primary
WBRNAi00107542Inferred_automaticallyRNAi_primary
WBRNAi00037670Inferred_automaticallyRNAi_primary
WBRNAi00107257Inferred_automaticallyRNAi_primary
WBRNAi00107396Inferred_automaticallyRNAi_primary
Expr_patternExpr1035977
Expr1161279
Expr2013524
Expr2031758
Drives_constructWBCnstr00029664
Construct_productWBCnstr00029664
Microarray_results (14)
Expression_clusterWBPaper00031040:TGF-beta_adult_downregulated
WBPaper00032097:CGH-1-associated-mRNA
WBPaper00037682:sma-2_sma-4_downregulated
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:germline-precursors_blastula-embryo_expressed
WBPaper00037950:germline-precursors_embryo_enriched
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00038168:lin-15B(n744)_downregulated
WBPaper00038438:E.faecalis_24hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00040221:DAF-12_target_ALF4
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044656:tatn-1(qd182)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_downregulated
WBPaper00045050:csr-1(hypomorph)_downregulated
WBPaper00045050:drh-3 (ne4253)_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Oogenic
WBPaper00045571:germline-ablation_downregulated
WBPaper00045729:gld-2(RNAi)_downregulated
WBPaper00045774:clk-1_downregulated
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
WBPaper00046499:AMPK_regulated
WBPaper00048611:MnCl2_downregulated
WBPaper00048762:FOG-3_associated
WBPaper00048988:neuron_expressed
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049498:npr-1(ur89)_regulated_6
WBPaper00049545:jmjd-3.1(+)_downregulated
WBPaper00049942:HeatShock_upregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050859:downregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:downregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_downregulated
WBPaper00053154:human-amyloid-beta_tau_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:embryo-to-L1_upregulated_WT_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_L1_SMARTseq
WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_starved-L1_Truseq
WBPaper00053321:PGCs_enriched_NuGen
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053814:15C_downregulated_OP50
WBPaper00054192:cold-shock_downregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055103:thoc-5(wy822)_downregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Rapamycin-Allantoin_upregulated
WBPaper00055354:Rapamycin_upregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055648:germline_expressed
WBPaper00055804:FBF-1-FBF-2-associated_oogenic-enriched
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:atfs-1(et15)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056090:E.faecalis_downregulated_hpx-2(dg047)
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056165:MINA-1_interacting_mRNA
WBPaper00056169:rrf-3(pk1426)_downregulated_embryo
WBPaper00056284:ints-5(RNAi)_downregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056826:hmc_biased
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057154:HeatShock_downregulated_mRNA
WBPaper00057154:HeatShock_upregulated_miRNA-target
WBPaper00057288:Cold_downregulated_transcript
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058598:mex-1(or286)_downregulated
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058598:sin-3(tm1276)_upregulated
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00059027:neuron-synapses_enriched
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00059739:hira-1(gk835598)_upregulated_L4
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060459:bcat-1(RNAi)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060871:M.humicola-infection_48h_regulated
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:HB101_downregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061045:Y56A3A.22(cck200)_downregulated
WBPaper00061203:sin-3(tm1276)_downregulated
WBPaper00061203:spr-1(ok2144)_downregulated
WBPaper00061274:hypergravity_15xg_upregulated
WBPaper00061340:Neuroblast_ASH_RIB
WBPaper00061527:T24D1.3-egg-1
WBPaper00061653:alh-4(hj221)_upregulated
WBPaper00061699:daf-18(ok480)_downregulated
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062118:neural-HSF-1_upregulated
WBPaper00062159:hda-2(ok1479)_downregulated
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062440:crh-1(n3315)_upregulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062456:doxycycline_downregulated_CB4856_transcript
WBPaper00062497:xpf-1(tm2842)_downregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064559:meg-1(vr10)meg-2(RNAi)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064769:him-17(me24)_downregulated
WBPaper00064871:hypoxia_upregulated_F2
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065158:25C_vs_15C_upregulated_AFD
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066110:Doxorubicin_downregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
cgc4489_group_2
WBPaper00005124:testosterone_10-9M_regulated
WBPaper00025032:cluster_8
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00028948:cep-1(gk138)+UV_upregulated
WBPaper00030985:Enterococcus_faecalis_downregulated
WBPaper00032165:A_to_C_transit_decreased
WBPaper00032165:differentially_expressed_with_age_medoid_5
WBPaper00034757:down_by_oxidative_stress
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_B
WBPaper00036286:Pattern_F
WBPaper00037147:heatshock_upregulated
WBPaper00037611:GLD-2-associated
WBPaper00037611:RNP-8-associated
WBPaper00037695:DD_3-day
WBPaper00037901:GLD-1_mRNA_targets
WBPaper00038060:SUMO-1_upregulated
WBPaper00038427:lin-54_germline_changed
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2down
WBPaper00040210:Diazinon_24C_regulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00040963:TA300_down
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00046083:ogt-1(ok1474)_OP50_upregulated
WBPaper00046083:pmk-1(km25)_OP50_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00051387:Triclosan_downregulated
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc6390]:Cluster_E
[cgc6390]:oogenesis-enriched
Interaction (43)
Map_infoMapIVPosition8.88695
PositivePositive_cloneY62E10AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00027683
WBPaper00029058
WBPaper00064117
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene