WormBase Tree Display for Gene: WBGene00013302
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| WBGene00013302 | SMap | S_parent | Sequence | Y57G11C | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | vti-1 | Person_evidence | WBPerson3132 | |||||
| Sequence_name | Y57G11C.4 | ||||||||
| Molecular_name | Y57G11C.4 | ||||||||
| Y57G11C.4.1 | |||||||||
| CE28871 | |||||||||
| Other_name | CELE_Y57G11C.4 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | vti-1 | ||||||||
| DB_info | Database | AceView | gene | 4P526 | |||||
| 4P530 | |||||||||
| WormQTL | gene | WBGene00013302 | |||||||
| WormFlux | gene | WBGene00013302 | |||||||
| NDB | locus_tag | CELE_Y57G11C.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00013302|UniProtKB=O18230 | |||||||
| family | PTHR21230 | ||||||||
| NCBI | gene | 178397 | |||||||
| RefSeq | protein | NM_070380.5 | |||||||
| TREEFAM | TREEFAM_ID | TF312874 | |||||||
| TrEMBL | UniProtAcc | O18230 | |||||||
| UniProt_GCRP | UniProtAcc | O18230 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 26 Mar 2010 11:10:21 | WBPerson2970 | Name_change | CGC_name | vti-1 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | vti | ||||||||
| Allele (22) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Contained_in_operon | CEOP4651 | ||||||||
| Ortholog (34) | |||||||||
| Paralog | WBGene00007128 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00019757 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Predicted to enable SNAP receptor activity and SNARE binding activity. Predicted to be involved in macroautophagy and vesicle-mediated transport. Predicted to be located in endomembrane system. Predicted to be part of SNARE complex. Is an ortholog of human VTI1A (vesicle transport through interaction with t-SNAREs 1A). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y57G11C.4 | |||||||
| Corresponding_CDS_history | Y57G11C.4:wp59 | ||||||||
| Corresponding_transcript | Y57G11C.4.1 | ||||||||
| Other_sequence (33) | |||||||||
| Associated_feature | WBsf231212 | ||||||||
| WBsf231213 | |||||||||
| WBsf231214 | |||||||||
| WBsf231215 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00110523 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00110510 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00110498 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057705 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1017761 | ||||||||
| Expr1035932 | |||||||||
| Expr1161119 | |||||||||
| Expr2018041 | |||||||||
| Expr2036178 | |||||||||
| Drives_construct | WBCnstr00029701 | ||||||||
| Construct_product | WBCnstr00029701 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (60) | |||||||||
| Interaction (87) | |||||||||
| Map_info | Map | IV | Position | 12.4393 | Error | 0.00184 | |||
| Positive | Positive_clone | Y57G11C | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00055090 | |||||||||
| WBPaper00066210 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
