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WormBase Tree Display for Gene: WBGene00013244

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Name Class

WBGene00013244SMapS_parentSequenceY56A3A
IdentityVersion1
NameSequence_nameY56A3A.33
Molecular_nameY56A3A.33
Y56A3A.33.1
CE54144
Other_nameCELE_Y56A3A.33Accession_evidenceNDBBX284603
Public_nameY56A3A.33
DB_infoDatabaseAceViewgene3N90
WormQTLgeneWBGene00013244
WormFluxgeneWBGene00013244
NDBlocus_tagCELE_Y56A3A.33
PanthergeneCAEEL|WormBase=WBGene00013244|UniProtKB=Q9U220
familyPTHR12801
NCBIgene176636
RefSeqproteinNM_001379943.3
TREEFAMTREEFAM_IDTF331871
TrEMBLUniProtAccQ9U220
UniProt_GCRPUniProtAccQ9U220
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (90)
StrainWBStrain00036304
RNASeq_FPKM (74)
GO_annotation00098626
00098627
00098628
00120144
00120145
Ortholog (39)
ParalogWBGene00004095Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012465Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00044217Caenorhabditis elegansFrom_analysismodENCODE_Pseudogenes
WBGene00015462Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021653Caenorhabditis elegansFrom_analysisPanther
Structured_descriptionAutomated_descriptionPredicted to enable exonuclease activity. Predicted to be located in nucleus. Is an ortholog of human REXO1L1P (REXO1 like 1, pseudogene).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY56A3A.33
Corresponding_CDS_historyY56A3A.33:wp275
Corresponding_transcriptY56A3A.33.1
Other_sequence (33)
Associated_featureWBsf667487
WBsf717997
WBsf981612
WBsf994551
WBsf994552
WBsf994553
WBsf1016126
WBsf1016127
WBsf1016128
Experimental_infoRNAi_resultWBRNAi00012282Inferred_automaticallyRNAi_primary
WBRNAi00021081Inferred_automaticallyRNAi_primary
WBRNAi00006958Inferred_automaticallyRNAi_primary
WBRNAi00064123Inferred_automaticallyRNAi_primary
WBRNAi00012277Inferred_automaticallyRNAi_primary
WBRNAi00057602Inferred_automaticallyRNAi_primary
WBRNAi00057601Inferred_automaticallyRNAi_primary
Expr_patternExpr1020244
Expr1035902
Expr1161018
Expr2008005
Expr2026246
Microarray_results (21)
Expression_clusterWBPaper00036375:enriched_in_PVD_OLL
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00038061:aldicarb_upregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00038438:S.marcescens_24hr_downregulated_RNAseq
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044736:flat_dev_expression
WBPaper00045257:bar-1(ga80)_upregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Oogenic
WBPaper00045729:gld-2(RNAi)_upregulated
WBPaper00045774:clk-1_upregulated
WBPaper00045934:wrn-1(gk99)_downregulated
WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
WBPaper00048690:male-Z1-Z4_enriched
WBPaper00048988:neuron_expressed
WBPaper00050053:muscle_enriched_Day4
WBPaper00050053:muscle_enriched_Day12
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:OsmoticStress_regulated_NoFood
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_enriched
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00051039:germline_enriched
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055626:pry-1(mu38)_downregulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056826:SGP_biased
WBPaper00057006:DietaryRestriction_downregulated
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057154:HeatShock_upregulated_mRNA
WBPaper00057254:MWCNT_upregulated_mRNA
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00058958:100mGy-irradiation-72h_upregulated
WBPaper00058969:RIS_depleted
WBPaper00059253:sucrose_stearic-acid_downregulated
WBPaper00059334:sacy-1(depletion)_regulated
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059604:fluvastatin_downregulated_dlk-1(km12)
WBPaper00059604:fluvastatin_downregulated_N2
WBPaper00059664:srbc-48(ac23)_downregulated
WBPaper00060014:set-2(tm1630)_upregulated
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060661:sensory-neuron_enriched
WBPaper00060764:swsn-1(os22ts)_downregulated
WBPaper00060909:atfs-1(et18)_upregulated
WBPaper00061007:HB101_downregulated
WBPaper00061274:hypergravity_10xg_downregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061340:NSM_parent
WBPaper00061527:B0511.6_180-Y54E10BR.4_1509
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062146:MOG-7-degron_2h_regulated
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062456:doxycycline_downregulated_N2_transcript
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00062590:Aging_upregulated_neuron
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064315:mes-3(bn199)_upregulated_EGCs
WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
WBPaper00064494:postdauer_upregulated_AWA
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064637:cox-5B(RNAi)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065158:AFD_enriched
WBPaper00065288:mdt-15(tm2182)_upregulated
WBPaper00065749:Heat-Shock_upregulated_N2
WBPaper00065835:Day11_vs_Day1_upregulated
WBPaper00065841:13_0
WBPaper00065841:34_1
WBPaper00065841:57_0
WBPaper00065841:57_1
cgc4489_group_13
cgc4489_group_21
WBPaper00025032:cluster_199
WBPaper00025141:N2_Expressed_Genes
WBPaper00027342:alpha-Synuclein(A53T)_downregulated
WBPaper00027342:alpha-Synuclein(WT)_downregulated
WBPaper00030985:Serratia_marcesens_downregulated
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031832:slr-2_regulated
WBPaper00032062:age_regulated_genes
WBPaper00032165:A_to_C_transit_increased
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00034739:N2lessDR1350
WBPaper00034757:up_by_oxidative_stress
WBPaper00035905:FBF-1_Associated
WBPaper00036123:Atrazine_regulated
WBPaper00036286:Pattern_B
WBPaper00036375:depleted_in_PVD_OLL
WBPaper00037695:CC_3-day
WBPaper00038172:tax-6null_up_regulated
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00039866:ClassComp_daf-19_upregulated
WBPaper00040210:Chlorpyrifos_16C_regulated
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041960:daf-16_fasting_upregulated
WBPaper00041960:kgb-1_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00044091:Bpseudomallei_induced_4h
WBPaper00044091:Bpseudomallei_induced_8h
WBPaper00045263:0.1mM-paraquat_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:N2_rapamycin_downregulated
WBPaper00050538:Fasting_upregulated
WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
WBPaper00053827:pyoverdine_upregulated
[cgc5976]:class_1
InteractionWBInteraction000049190
WBInteraction000049218
WBInteraction000206937
WBInteraction000357538
WBInteraction000361157
Map_infoPositivePositive_cloneY56A3AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII13.828
ReferenceWBPaper00005736
WBPaper00035168
WBPaper00038491
WBPaper00055090
MethodGene