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WormBase Tree Display for Gene: WBGene00013219

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Name Class

WBGene00013219SMapS_parentSequenceY54G11A
IdentityVersion2
NameCGC_nameelof-1
Sequence_nameY54G11A.11
Molecular_nameY54G11A.11
Y54G11A.11.1
CE22483
Y54G11A.11.2
Other_nameCELE_Y54G11A.11Accession_evidenceNDBBX284602
Public_nameelof-1
DB_infoDatabaseAceViewgene2O637
WormQTLgeneWBGene00013219
WormFluxgeneWBGene00013219
NDBlocus_tagCELE_Y54G11A.11
PanthergeneCAEEL|WormBase=WBGene00013219|UniProtKB=Q9XVZ8
familyPTHR20934
NCBIgene175090
RefSeqproteinNM_064582.10
SwissProtUniProtAccQ9XVZ8
TREEFAMTREEFAM_IDTF313731
UniProt_GCRPUniProtAccQ9XVZ8
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
201 Jun 2020 11:44:25WBPerson1983Name_changeCGC_nameelof-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classelof
Allele (23)
Possibly_affected_byWBVar02154114
StrainWBStrain00049418
RNASeq_FPKM (74)
GO_annotation00102952
00102953
00102954
00102955
00102956
00102957
00102958
00102959
00102960
OrthologWBGene00032284Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00062251Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00147659Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00159202Caenorhabditis brenneriFrom_analysisWormBase-Compara
WBGene00227094Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g12661Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g7524Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18272Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g461Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g19979Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g1951Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g16025Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g3585Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g7847Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g3754Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00931.g14999Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-Y54G11A.11Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g15683Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02480.g26677Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_15863Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_004679Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g10204Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g14525Panagrellus redivivusFrom_analysisWormBase-Compara
Pan_g16324Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_20164500Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrII_pilon.g6522Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246958Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00302777Trichuris murisFrom_analysisWormBase-Compara
SGD:S000001643Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0036531Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0063670Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-1385Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:28691Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1913376Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1587399Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
Structured_descriptionAutomated_descriptionPredicted to enable RNA polymerase II complex binding activity. Predicted to be involved in transcription elongation by RNA polymerase II. Located in nucleolus. Is an ortholog of human ELOF1 (elongation factor 1).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY54G11A.11
Corresponding_transcriptY54G11A.11.1
Y54G11A.11.2
Other_sequence (56)
Associated_featureWBsf644842
WBsf981361
WBsf222445
WBsf222446
WBsf222447
Experimental_infoRNAi_resultWBRNAi00037484Inferred_automaticallyRNAi_primary
WBRNAi00062451Inferred_automaticallyRNAi_primary
WBRNAi00057423Inferred_automaticallyRNAi_primary
WBRNAi00020984Inferred_automaticallyRNAi_primary
Expr_patternExpr9475
Expr1015378
Expr1035879
Expr1160857
Expr2007921
Expr2026163
Drives_constructWBCnstr00029725
Construct_productWBCnstr00014040
WBCnstr00029725
Microarray_results (21)
Expression_cluster (93)
Interaction (18)
Map_infoPositivePositive_cloneY54G11AInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionII22.9082
ReferenceWBPaper00038444
WBPaper00038491
WBPaper00055090
WBPaper00061904
MethodGene