WormBase Tree Display for Gene: WBGene00013200

WBGene00013200 SMap: S_parent: Sequence: Y54E5A
  Identity: Version: 1
    Name: Sequence_name: Y54E5A.5
      Molecular_name: Y54E5A.5
        Y54E5A.5.1
        CE20316
      Other_name: CELE_Y54E5A.5 Accession_evidence: NDB BX284601
      Public_name: Y54E5A.5
    DB_info: Database: AceView gene 1P298
        WormQTL gene WBGene00013200
        WormFlux gene WBGene00013200
        NDB locus_tag CELE_Y54E5A.5
        Panther gene CAEEL|WormBase=WBGene00013200|UniProtKB=Q9XWK2
          family PTHR13410
        NCBI gene 173330
        RefSeq protein NM_061152.6
        TREEFAM TREEFAM_ID TF314442
        TrEMBL UniProtAcc Q9XWK2
        UniProt_GCRP UniProtAcc Q9XWK2
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (21)
    Strain: WBStrain00037344
    RNASeq_FPKM (74)
    GO_annotation: 00103610
    Contained_in_operon: CEOP1748
    Ortholog: WBGene00038920 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00060837 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00148966 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00130674 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00116312 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
      WBGene00227046 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g9575 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g13420 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g447 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8275 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g13396 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8690 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g9247 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g2328 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP40.g10764 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00247.g7834 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_23602.g27045 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y54E5A.5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18988 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp11.Scaffold630.g18996 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_04211.g32364 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09185 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_001508 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g05936 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g23809 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_10003200 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrI_pilon.g2944 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00237240 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00259404 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00302675 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000006146 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0037087 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040718-459 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:28790 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1914933 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:1562502 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Located in sarcoplasmic reticulum. Is an ortholog of human PBDC1 (polysaccharide biosynthesis domain containing 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y54E5A.5
    Corresponding_transcript: Y54E5A.5.1
    Other_sequence (31)
    Associated_feature: WBsf649771
      WBsf655249
      WBsf220641
  Experimental_info: RNAi_result: WBRNAi00061940 Inferred_automatically: RNAi_primary
      WBRNAi00033562 Inferred_automatically: RNAi_primary
      WBRNAi00004742 Inferred_automatically: RNAi_primary
      WBRNAi00057384 Inferred_automatically: RNAi_primary
      WBRNAi00117006 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr9421
      Expr1027756
      Expr1035867
      Expr1160818
      Expr2007903
      Expr2026145
    Construct_product: WBCnstr00013986
    Microarray_results (18)
    Expression_cluster (139)
    Interaction (18)
  Map_info: Positive: Positive_clone: Y54E5A Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: I 26.3775
  Reference: WBPaper00038444
    WBPaper00038491
    WBPaper00055090
    WBPaper00064339
  Method: Gene