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WormBase Tree Display for Gene: WBGene00013025

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Name Class

WBGene00013025SMapS_parentSequenceY49A3A
IdentityVersion3
NameCGC_namevha-13
Sequence_nameY49A3A.2
Molecular_nameY49A3A.2
Y49A3A.2.1
CE22210
Other_namephi-51Person_evidenceWBPerson2582
Y49A3A.bCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y49A3A.2Accession_evidenceNDBBX284605
Public_namevha-13
DB_infoDatabase (13)
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
205 Jul 2004 15:50:25WBPerson1971Name_changeCGC_namevha-13
317 Mar 2005 13:54:35WBPerson2970Name_changeOther_namephi-51
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvha
Allele (34)
StrainWBStrain00002259
WBStrain00002389
WBStrain00051361
WBStrain00051764
WBStrain00051767
WBStrain00054681
WBStrain00055526
WBStrain00054688
RNASeq_FPKM (74)
GO_annotation (17)
Contained_in_operonCEOP5412
OrthologWBGene00059138Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00027269Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00163101Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00113083Pristionchus pacificusFrom_analysisOMA
WormBase-Compara
WBGene00125058Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00226947Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g717Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g11559Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g11561Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g18849Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g2100Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP28.g2101Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11988Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g25818Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g14047Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g14947Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g1790Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g4604Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00337.g9428Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-vha-13Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold630.g19903Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00004.g257Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_23476Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_017526Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07400Oscheius tipulaeFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07402Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g22202Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50361800Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g16506Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00243812Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00263243Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00266390Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00294918Trichuris murisFrom_analysisWormBase-Compara
SGD:S000002344Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0032464Drosophila melanogasterFrom_analysisOrthoFinder
Panther
PhylomeDB
FB:FBgn0263598Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
FB:FBgn0265262Drosophila melanogasterFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-030131-9529Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ZFIN:ZDB-GENE-040426-1143Danio rerioFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
HGNC:851Homo sapiensFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
MGI:1201780Mus musculusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
RGD:1596464Rattus norvegicusFrom_analysisEnsEMBL-Compara
Hieranoid
Inparanoid
OMA
OrthoFinder
OrthoInspector
Panther
PhylomeDB
SonicParanoid
ParalogWBGene00000229Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00004959Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006921Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00010419Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00012040Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionvha-13 encodes an ortholog of subunit A of the cytoplasmic (V1) domainof vacuolar proton-translocating ATPase (V-ATPase); VHA-13 is predictedto hydrolyse ATP as part of a cytosolic VHA-12/VHA-13 heterohexamer,whose activity drives the V-ATPase rotor; VHA-13 levels are lowered inmutants with either abnormally low or abnormally high calcineurinlevels, and elevated in mutants lacking both calcineurin andcalreticulin; VHA-13 is dispensable for alae formation, like the V1subunit VHA-8, but not like the V0 subunits VHA-1 and VHA-4.Paper_evidenceWBPaper00006525
WBPaper00026649
WBPaper00027022
WBPaper00027024
WBPaper00027697
WBPaper00028773
WBPaper00028774
WBPaper00028775
Curator_confirmedWBPerson567
Date_last_updated19 Nov 2006 00:00:00
Automated_descriptionPredicted to enable proton-transporting ATPase activity, rotational mechanism. Involved in lysosomal lumen acidification. Predicted to be part of proton-transporting V-type ATPase, V1 domain. Expressed in head. Human ortholog(s) of this gene implicated in autosomal recessive cutis laxa type IID and developmental and epileptic encephalopathy 93. Is an ortholog of human ATP6V1A (ATPase H+ transporting V1 subunit A).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Disease_infoPotential_modelDOID:0070129Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:851)
DOID:0112275Homo sapiensInferred_automaticallyInferred by orthology to human genes with DO annotation (HGNC:851)
Molecular_infoCorresponding_CDSY49A3A.2
Corresponding_transcriptY49A3A.2.1
Other_sequence (145)
Associated_feature (23)
Experimental_infoRNAi_result (18)
Expr_patternChronogram1537
Expr7016
Expr7017
Expr1022390
Expr1035790
Expr1160437
Expr2017979
Expr2036115
Drives_constructWBCnstr00002973
WBCnstr00004482
Microarray_results (29)
Expression_cluster (212)
Interaction (134)
Map_infoMapVPosition6.24843Error0.0041
PositivePositive_cloneY49A3AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (18)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene