WormBase Tree Display for Gene: WBGene00012988

WBGene00012988 SMap: S_parent: Sequence: Y48C3A
  Identity: Version: 2
    Name: CGC_name: ztf-22 Person_evidence: WBPerson1997
      Sequence_name: Y48C3A.4
      Molecular_name: Y48C3A.4a
        Y48C3A.4a.1
        CE22135
        Y48C3A.4b
        CE54249
        Y48C3A.4b.1
      Other_name: CELE_Y48C3A.4 Accession_evidence: NDB BX284602
      Public_name: ztf-22
    DB_info: Database: AceView gene 2N570
        WormQTL gene WBGene00012988
        SignaLink protein WBGene00012988
        WormFlux gene WBGene00012988
        NDB locus_tag CELE_Y48C3A.4
        NCBI gene 174971
        RefSeq protein NM_064410.4
            NM_001393219.1
        TrEMBL UniProtAcc Q9NAG7
            A0A7R9SUY9
        UniProt_GCRP UniProtAcc A0A7R9SUY9
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 18 Apr 2008 09:32:24 WBPerson2970 Name_change: CGC_name: ztf-22
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ztf
    Allele (194)
    Strain: WBStrain00037675
      WBStrain00037703
    RNASeq_FPKM (74)
    Ortholog: WBGene00039722 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00057584 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00155624 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00192989 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00130915 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00226905 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g7629 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g5135 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g1494 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g17292 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g10843 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g3259 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g3110 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g4720 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5602 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-ztf-22 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold586.g4880 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00020.g1222 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_06854 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005800 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10105 Oscheius tipulae From_analysis: WormBase-Compara
      Sp34_20072600 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g6347 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00247620 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00098385 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00277847 Pristionchus pacificus From_analysis: WormBase-Compara
    Paralog: WBGene00011661 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Expressed in dorsal nerve cord; head muscle; head neurons; intestine; and ventral nerve cord. Is predicted to encode a protein with the following domain: Zinc finger C2H2-type. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y48C3A.4a
      Y48C3A.4b
    Corresponding_transcript: Y48C3A.4a.1
      Y48C3A.4b.1
    Other_sequence: CR00694
      CRC09852_1
      CBC06125_1
      ALC00087_1
      MH04165
      BU585482.1
    Associated_feature: WBsf666305
      WBsf666306
      WBsf978777
      WBsf990379
      WBsf990380
      WBsf1013603
      WBsf1013604
      WBsf224152
      WBsf224153
    Transcription_factor: WBTranscriptionFactor001098
  Experimental_info: RNAi_result: WBRNAi00056902 Inferred_automatically: RNAi_primary
      WBRNAi00107437 Inferred_automatically: RNAi_primary
      WBRNAi00002217 Inferred_automatically: RNAi_primary
      WBRNAi00037247 Inferred_automatically: RNAi_primary
      WBRNAi00056901 Inferred_automatically: RNAi_primary
      WBRNAi00037246 Inferred_automatically: RNAi_primary
      WBRNAi00092048 Inferred_automatically: RNAi_primary
    Expr_pattern (6)
    Drives_construct: WBCnstr00012867
      WBCnstr00029774
    Construct_product: WBCnstr00029774
      WBCnstr00038814
    Microarray_results (20)
    Expression_cluster (109)
    Interaction: WBInteraction000519928
      WBInteraction000527330
      WBInteraction000528085
      WBInteraction000531323
      WBInteraction000531804
      WBInteraction000532072
      WBInteraction000533790
      WBInteraction000535189
  Map_info: Map: II Position: 16.34 Error: 0.051335
    Positive: Positive_clone: Y48C3A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00048690
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene