WormBase Tree Display for Gene: WBGene00011661

WBGene00011661 SMap: S_parent: Sequence: CHROMOSOME_II
  Identity: Version: 2
    Name: CGC_name: ztf-27 Person_evidence: WBPerson1997
      Sequence_name: T09F3.1
      Molecular_name: T09F3.1
        T09F3.1.1
        CE35906
      Other_name: CELE_T09F3.1 Accession_evidence: NDB BX284602
      Public_name: ztf-27
    DB_info: Database: AceView gene 2K679
        WormQTL gene WBGene00011661
        WormFlux gene WBGene00011661
        NDB locus_tag CELE_T09F3.1
        NCBI gene 188340
        RefSeq protein NM_063834.5
        TREEFAM TREEFAM_ID TF351206
        TrEMBL UniProtAcc G5EDA0
        UniProt_GCRP UniProtAcc G5EDA0
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 18 Apr 2008 09:32:24 WBPerson2970 Name_change: CGC_name: ztf-27
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ztf
    Allele (49)
    RNASeq_FPKM (74)
    GO_annotation: 00013590
      00013591
      00013592
      00013593
      00013594
    Ortholog (23)
    Paralog: WBGene00012988 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00003380 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013240 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00013970 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022592 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable DNA-binding transcription repressor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleoplasm. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T09F3.1
    Corresponding_CDS_history: T09F3.1:wp111
    Corresponding_transcript: T09F3.1.1
    Other_sequence: FD514145.1
      Acan_isotig12474
      EX553699.1
      CRC02234_1
      Dviv_isotig25115
      Tcol_isotig16304
      Oden_isotig22175
      ACC19088_1
      CSC01618_1
      CR03973
    Associated_feature (12)
    Transcription_factor: WBTranscriptionFactor001056
  Experimental_info: RNAi_result: WBRNAi00052967 Inferred_automatically: RNAi_primary
      WBRNAi00023584 Inferred_automatically: RNAi_primary
      WBRNAi00023308 Inferred_automatically: RNAi_primary
      WBRNAi00035396 Inferred_automatically: RNAi_primary
      WBRNAi00023818 Inferred_automatically: RNAi_primary
      WBRNAi00024106 Inferred_automatically: RNAi_primary
      WBRNAi00018504 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1011767
      Expr1035133
      Expr1156570
      Expr2018198
      Expr2036335
    Drives_construct: WBCnstr00030491
    Construct_product: WBCnstr00030491
      WBCnstr00038837
    Microarray_results (19)
    Expression_cluster (89)
    Interaction: WBInteraction000029026
      WBInteraction000052369
      WBInteraction000384547
      WBInteraction000530339
  Map_info: Map: II Position: 2.54225 Error: 0.008949
    Positive: Positive_clone: T09F3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene