WormBase Tree Display for Gene: WBGene00012982
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| WBGene00012982 | SMap | S_parent | Sequence | Y48B6A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | jmjd-2 | Person_evidence | WBPerson3009 | |||||
| WBPerson585 | |||||||||
| Sequence_name | Y48B6A.11 | ||||||||
| Molecular_name | Y48B6A.11 | ||||||||
| Y48B6A.11.1 | |||||||||
| CE41181 | |||||||||
| Other_name | CELE_Y48B6A.11 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | jmjd-2 | ||||||||
| DB_info | Database (13) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 06 Apr 2006 09:26:55 | WBPerson2970 | Name_change | CGC_name | jmjd-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | jmjd | ||||||||
| Allele (236) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (23) | |||||||||
| Ortholog (50) | |||||||||
| Paralog | WBGene00004319 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WormBase-Compara | |||||||||
| Structured_description | Automated_description | Enables histone H3K36me/H3K36me2 demethylase activity and histone H3K9me2/H3K9me3 demethylase activity. Predicted to be involved in chromatin remodeling and negative regulation of DNA-templated transcription. Predicted to be located in nucleus. Predicted to be part of chromatin. Expressed in pharynx. Human ortholog(s) of this gene implicated in several diseases, including gastrointestinal system cancer (multiple); nervous system cancer (multiple); and urinary system cancer (multiple). Is an ortholog of human KDM4C (lysine demethylase 4C). | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (17) | ||||||||
| Molecular_info | Corresponding_CDS | Y48B6A.11 | |||||||
| Corresponding_CDS_history | Y48B6A.11:wp176 | ||||||||
| Corresponding_transcript | Y48B6A.11.1 | ||||||||
| Other_sequence (22) | |||||||||
| Associated_feature | WBsf990660 | ||||||||
| WBsf990661 | |||||||||
| WBsf990662 | |||||||||
| WBsf1013805 | |||||||||
| WBsf224256 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00091537 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00091542 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00113491 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00037229 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056876 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00091512 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00061990 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7719 | ||||||||
| Expr1023947 | |||||||||
| Expr1035760 | |||||||||
| Expr1160328 | |||||||||
| Expr2012887 | |||||||||
| Expr2031121 | |||||||||
| Drives_construct | WBCnstr00012864 | ||||||||
| Microarray_results (28) | |||||||||
| Expression_cluster (111) | |||||||||
| Interaction (30) | |||||||||
| Map_info | Map | II | Position | 22.8907 | Error | 0.003458 | |||
| Positive | Positive_clone | Y48B6A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (18) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
