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WormBase Tree Display for Gene: WBGene00012977

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Name Class

WBGene00012977SMapS_parentSequenceY48A6C
IdentityVersion1
NameSequence_nameY48A6C.4
Molecular_nameY48A6C.4
Y48A6C.4.1
CE43502
Other_nameCELE_Y48A6C.4Accession_evidenceNDBBX284603
Public_nameY48A6C.4
DB_infoDatabaseAceViewgene3M213
WormQTLgeneWBGene00012977
WormFluxgeneWBGene00012977
NDBlocus_tagCELE_Y48A6C.4
PanthergeneCAEEL|WormBase=WBGene00012977|UniProtKB=Q9XWK5
familyPTHR16056
NCBIgene190016
RefSeqproteinNM_067032.4
TREEFAMTREEFAM_IDTF318197
TrEMBLUniProtAccQ9XWK5
UniProt_GCRPUniProtAccQ9XWK5
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (96)
RNASeq_FPKM (74)
GO_annotation00103625
00103626
00103627
00103628
OrthologWBGene00055907Caenorhabditis remaneiFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00033983Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00139424Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00128812Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00103982Pristionchus pacificusFrom_analysisInparanoid_8
WormBase-Compara
WBGene00226897Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g4490Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g13296Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g8885Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g1782Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g16825Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g21004Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10674Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g4741Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g10719Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP39.g19334Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g10059Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00036.g2042Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-Y48A6C.4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold596.g5301Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_02528.g26868Caenorhabditis sinicaFrom_analysisWormBase-Compara
GCK72_010314Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g14812Oscheius tipulaeFrom_analysisWormBase-Compara
Sp34_30096400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIII_pilon.g8994Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00246011Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00265087Strongyloides rattiFrom_analysisWormBase-Compara
SGD:S000001127Saccharomyces cerevisiaeFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
FB:FBgn0029999Drosophila melanogasterFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
ZFIN:ZDB-GENE-040426-2827Danio rerioFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
HGNC:25988Homo sapiensFrom_analysisOrthoFinder
OrthoInspector
Panther
PhylomeDB
MGI:1344413Mus musculusFrom_analysisEnsEMBL-Compara
OrthoFinder
Panther
PhylomeDB
RGD:1312045Rattus norvegicusFrom_analysisEnsEMBL-Compara
OrthoFinder
OrthoInspector
Panther
PhylomeDB
ParalogWBGene00007190Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00007786Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00009369Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011501Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00012976Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00015855Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00020070Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionConcise_descriptionY48A6C.4 encodes an ortholog of S. cerevisiae IPI1 that may suppress tumorous growth in the germ line by ensuring robust larval germline proliferation; like PRO-1, -2, and -3, Y48A6C.4 is probably required for ribosome biogenesis, suggesting a link between biogenesis in the distal sheath and control of cell division in the germ line.Paper_evidenceWBPaper00028280
WBPaper00028929
Curator_confirmedWBPerson567
Date_last_updated23 Apr 2008 00:00:00
Automated_descriptionPredicted to be located in nucleus. Predicted to be part of MLL1 complex. Is an ortholog of human TEX10 (testis expressed 10).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY48A6C.4
Corresponding_CDS_historyY48A6C.4:wp200
Corresponding_transcriptY48A6C.4.1
Other_sequenceGR978404.1
Hbac_isotig02411
JI174502.1
CBC08125_1
SC00846
CJC09707_1
HBC16354_1
EX914738.1
Associated_featureWBsf645601
WBsf994276
WBsf994277
WBsf1015929
WBsf1015930
WBsf225794
WBsf225795
Experimental_infoRNAi_resultWBRNAi00006365Inferred_automaticallyRNAi_primary
WBRNAi00009350Inferred_automaticallyRNAi_primary
WBRNAi00026750Inferred_automaticallyRNAi_primary
WBRNAi00071666Inferred_automaticallyRNAi_primary
WBRNAi00071364Inferred_automaticallyRNAi_primary
WBRNAi00002637Inferred_automaticallyRNAi_primary
WBRNAi00056871Inferred_automaticallyRNAi_primary
WBRNAi00037226Inferred_automaticallyRNAi_primary
Expr_patternExpr1021678
Expr1035755
Expr1160323
Expr2007653
Expr2025893
Microarray_results (22)
Expression_cluster (79)
InteractionWBInteraction000040356
WBInteraction000044341
WBInteraction000044345
WBInteraction000044354
WBInteraction000044359
WBInteraction000046099
WBInteraction000048561
WBInteraction000240606
WBInteraction000297044
Map_infoPositivePositive_cloneY48A6CInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIII6.07936
ReferenceWBPaper00028280
WBPaper00038491
WBPaper00055090
MethodGene