WormBase Tree Display for Gene: WBGene00012940
expand all nodes | collapse all nodes | view schema
| WBGene00012940 | SMap | S_parent | Sequence | Y47D3B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | Sequence_name | Y47D3B.3 | |||||||
| Molecular_name | Y47D3B.3 | ||||||||
| Y47D3B.3.1 | |||||||||
| CE43484 | |||||||||
| Other_name | CELE_Y47D3B.3 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | Y47D3B.3 | ||||||||
| DB_info | Database | AceView | gene | 3M493 | |||||
| WormQTL | gene | WBGene00012940 | |||||||
| WormFlux | gene | WBGene00012940 | |||||||
| NDB | locus_tag | CELE_Y47D3B.3 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00012940|UniProtKB=Q9XX04 | |||||||
| family | PTHR35572 | ||||||||
| NCBI | gene | 189979 | |||||||
| RefSeq | protein | NM_067067.5 | |||||||
| TREEFAM | TREEFAM_ID | TF353007 | |||||||
| TrEMBL | UniProtAcc | Q9XX04 | |||||||
| UniProt_GCRP | UniProtAcc | Q9XX04 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 27 Feb 2009 10:36:38 | WBPerson1983 | Event | Split_into | WBGene00185055 | ||||
| Split_into | WBGene00185055 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Allele (119) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00003249 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00009626 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00011694 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00012545 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00013884 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in hypodermis and rectal epithelial cell based on single-cell RNA-seq studies. Is affected by several genes including eat-2; clk-1; and dpy-7 based on microarray and RNA-seq studies. Is affected by nine chemicals including multi-walled carbon nanotube; Alovudine; and Zidovudine based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domain: Abnormal cell migration protein 18-like. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y47D3B.3 | |||||||
| Corresponding_CDS_history | Y47D3B.3:wp59 | ||||||||
| Y47D3B.3:wp130 | |||||||||
| Y47D3B.3:wp200 | |||||||||
| Corresponding_transcript | Y47D3B.3.1 | ||||||||
| Other_sequence | JI180218.1 | ||||||||
| Oden_isotig26693 | |||||||||
| JI243137.1 | |||||||||
| CK850623.1 | |||||||||
| WBC01953_1 | |||||||||
| Associated_feature | WBsf645613 | ||||||||
| WBsf994371 | |||||||||
| WBsf1015992 | |||||||||
| Experimental_info | Expr_pattern | Expr1019533 | |||||||
| Expr1035736 | |||||||||
| Expr1160226 | |||||||||
| Expr2007611 | |||||||||
| Expr2025848 | |||||||||
| Drives_construct | WBCnstr00029783 | ||||||||
| Construct_product | WBCnstr00029783 | ||||||||
| Microarray_results | GPL14144_Y47D3B.3_669-728_0.949_3_C | ||||||||
| GPL14144_Y47D3B.3_682-741_0.958_2_B | |||||||||
| GPL14144_Y47D3B.3_685-744_0.962_1_A | |||||||||
| GPL19516_CGZ0046950 | |||||||||
| GPL21109_Y47D3B.3 | |||||||||
| GPL8673_Y47D3B_3P00377 | |||||||||
| GPL8673_Y47D3B_3P00738 | |||||||||
| Expression_cluster (92) | |||||||||
| Interaction | WBInteraction000293622 | ||||||||
| WBInteraction000342233 | |||||||||
| WBInteraction000426021 | |||||||||
| Map_info | Positive | Positive_clone | Y47D3B | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
| Interpolated_map_position | III | 9.16695 | |||||||
| Method | Gene |
